feat: add pull request template

Merge pull request #1517 from qodo-ai/security_policy_md
Create SECURITY.md
2025-07-04 21:00:40 +08:00 · 2025-02-05 16:32:45 +02:00 · 2025-02-05 14:54:55 +02:00 · 2025-02-05 14:54:32 +02:00 · 2025-02-05 14:50:12 +02:00 · 2025-02-05 14:03:32 +02:00
58 changed files with 951 additions and 440 deletions
--- a/.github/ISSUE_TEMPLATE/bug-report.yml
+++ b/.github/ISSUE_TEMPLATE/bug-report.yml
@ -0,0 +1,38 @@
+name: "\U0001FAB2 Bug Report"
+description: Submit a bug report
+labels: ["bug"]
+body:
+
+  - type: dropdown
+    id: information-git-provider
+    attributes:
+      label: Git provider
+      description: 'The problem arises when using:'
+      options:
+        - "Github Cloud"
+        - "Github Enterprise"
+        - "Gitlab"
+        - "Bitbucket Cloud"
+        - "Bitbucket Server"
+        - "Azure"
+        - "Other"
+    validations:
+      required: true
+
+  - type: textarea
+    id: system-info
+    attributes:
+      label: System Info
+      description: Please share your system info with us.
+      placeholder: model used, deployment type (action/app/cli/...), etc...
+    validations:
+      required: true
+
+  - type: textarea
+    id: bug-details
+    attributes:
+      label: Bug details
+      description: Please describe the problem.
+      placeholder: Describe the problem
+    validations:
+      required: true
--- a/.github/ISSUE_TEMPLATE/config.yml
+++ b/.github/ISSUE_TEMPLATE/config.yml
@ -0,0 +1,10 @@
+blank_issues_enabled: false
+version: 0.1
+contact_links:
+  - name: Discussions
+    url: https://github.com/qodo-ai/pr-agent/discussions
+    about: GitHub Discussions
+
+  - name: Discord community
+    url: https://discord.com/channels/1057273017547378788/1126104260430528613
+    about: Join our discord community
--- a/.github/ISSUE_TEMPLATE/feature-request.yml
+++ b/.github/ISSUE_TEMPLATE/feature-request.yml
@ -0,0 +1,21 @@
+name: "\U0001F4A1 Feature request"
+description: Submit a proposal/request for a new PR-Agent feature
+labels: ["feature"]
+body:
+  - type: textarea
+    id: feature-request
+    validations:
+      required: true
+    attributes:
+      label: Feature request
+      description: |
+        Description of the feature proposal.
+
+  - type: textarea
+    id: motivation
+    validations:
+      required: true
+    attributes:
+      label: Motivation
+      description: |
+        Outline the motivation for the proposal.
--- a/.github/ISSUE_TEMPLATE/miscellaneous.yml
+++ b/.github/ISSUE_TEMPLATE/miscellaneous.yml
@ -0,0 +1,36 @@
+name: "❔ General Issue"
+description: Submit a general issue
+labels: ["general"]
+body:
+
+  - type: dropdown
+    id: information-git-provider
+    attributes:
+      label: Git provider (optional)
+      description: 'Git Provider:'
+      options:
+        - "Github Cloud"
+        - "Github Enterprise"
+        - "Gitlab"
+        - "Bitbucket Cloud"
+        - "Bitbucket Server"
+        - "Azure"
+        - "Other"
+
+  - type: textarea
+    id: system-info
+    attributes:
+      label: System Info (optional)
+      description: Please share your system info with us.
+      placeholder: model used, deployment type (action/app/cli/...), etc...
+    validations:
+      required: false
+
+  - type: textarea
+    id: issues-details
+    attributes:
+      label: Issues details
+      description: Please share the issues details.
+      placeholder: Describe the issue
+    validations:
+      required: true
--- a/CODE_OF_CONDUCT.md
+++ b/CODE_OF_CONDUCT.md
@ -0,0 +1,45 @@
+# Contributor Code of Conduct
+
+As contributors and maintainers of this project, and in the interest of fostering an open
+and welcoming community, we pledge to respect all people who contribute through reporting
+issues, posting feature requests, updating documentation, submitting pull requests or
+patches, and other activities.
+
+We are committed to making participation in this project a harassment-free experience for
+everyone, regardless of level of experience, gender, gender identity and expression,
+sexual orientation, disability, personal appearance, body size, race, ethnicity, age,
+religion, or nationality.
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery
+* Personal attacks
+* Trolling or insulting/derogatory comments
+* Public or private harassment
+* Publishing other's private information, such as physical or electronic addresses,
+  without explicit permission
+* Other unethical or unprofessional conduct
+
+Project maintainers have the right and responsibility to remove, edit, or reject comments,
+commits, code, wiki edits, issues, and other contributions that are not aligned to this
+Code of Conduct, or to ban temporarily or permanently any contributor for other behaviors
+that they deem inappropriate, threatening, offensive, or harmful.
+
+By adopting this Code of Conduct, project maintainers commit themselves to fairly and
+consistently applying these principles to every aspect of managing this project. Project
+maintainers who do not follow or enforce the Code of Conduct may be permanently removed
+from the project team.
+
+This Code of Conduct applies both within project spaces and in public spaces when an
+individual is representing the project or its community.
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by
+contacting a project maintainer at tal.r@qodo.ai . All complaints will
+be reviewed and investigated and will result in a response that is deemed necessary and
+appropriate to the circumstances. Maintainers are obligated to maintain confidentiality
+with regard to the reporter of an incident.
+
+This Code of Conduct is adapted from the
+[Contributor Covenant](https://contributor-covenant.org), version 1.3.0, available at
+[contributor-covenant.org/version/1/3/0/](https://contributor-covenant.org/version/1/3/0/)
+
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@ -0,0 +1,38 @@
+# Contributing to PR-Agent
+
+Thank you for your interest in contributing to the PR-Agent project! 
+
+## Getting Started
+
+1. Fork the repository and clone your fork
+2. Install Python 3.10 or higher
+3. Install dependencies (`requirements.txt` and `requirements-dev.txt`)
+4. Create a new branch for your contribution:
+   - For new features: `git checkout -b feature/your-feature-name`
+   - For bug fixes: `git checkout -b fix/issue-description`
+5. Make your changes
+6. Write or update tests as needed
+7. Run tests locally to ensure everything passes
+8. Commit your changes using conventional commit messages
+9. Push to your fork and submit a pull request
+
+## Development Guidelines
+
+- Keep pull requests focused on a single feature or fix
+- Follow the existing code style and formatting conventions
+- Add unit tests for any new functionality using pytest
+- Ensure test coverage for your changes
+- Update documentation as needed
+
+## Pull Request Process
+
+1. Ensure your PR includes a clear description of the changes
+2. Link any related issues
+3. Update the README.md if needed
+4. Wait for review from maintainers
+
+## Questions or Need Help?
+
+- Join our [Discord community](https://discord.com/channels/1057273017547378788/1126104260430528613) for questions and discussions
+- Check the [documentation](https://qodo-merge-docs.qodo.ai/) for detailed information
+- Report bugs or request features through [GitHub Issues](https://github.com/qodo-ai/pr-agent/issues)
--- a/PULL_REQUEST_TEMPLATE.md
+++ b/PULL_REQUEST_TEMPLATE.md
@ -0,0 +1,48 @@
+## 📌 Pull Request Template
+
+### 1️⃣ Short Description
+<!-- Provide a concise summary of the changes in this PR. -->
+
+---
+
+### 2️⃣ Related Open Issue
+<!-- Link the related issue(s) this PR is addressing, e.g., Fixes #123 or Closes #456. -->
+Fixes #
+
+---
+
+### 3️⃣ PR Type
+<!-- Select one of the following by marking `[x]` -->
+
+- [ ] 🐞 Bug Fix
+- [ ] ✨ New Feature
+- [ ] 🔄 Refactoring
+- [ ] 📖 Documentation Update
+
+---
+
+### 4️⃣ Does this PR Introduce a Breaking Change?
+<!-- Mark the applicable option -->
+- [ ] ❌ No
+- [ ] ⚠️ Yes (Explain below)
+
+If **yes**, describe the impact and necessary migration steps:
+<!-- Provide a short explanation of what needs to be changed. -->
+
+---
+
+### 5️⃣ Current Behavior (Before Changes)
+<!-- Describe the existing behavior before applying the changes in this PR. -->
+
+---
+
+### 6️⃣ New Behavior (After Changes)
+<!-- Explain how the behavior changes with this PR. -->
+
+---
+
+### ✅ Checklist
+- [ ] Code follows the project's coding guidelines.
+- [ ] Tests have been added or updated (if applicable).
+- [ ] Documentation has been updated (if applicable).
+- [ ] Ready for review and approval.
--- a/README.md
+++ b/README.md
@ -10,10 +10,10 @@

 </picture>
 <br/>
-Qode Merge PR-Agent aims to help efficiently review and handle pull requests, by providing AI feedback and suggestions
+PR-Agent aims to help efficiently review and handle pull requests, by providing AI feedback and suggestions
 </div>

-[![Static Badge](https://img.shields.io/badge/Chrome-Extension-violet)](https://chromewebstore.google.com/detail/pr-agent-chrome-extension/ephlnjeghhogofkifjloamocljapahnl)
+[![Static Badge](https://img.shields.io/badge/Chrome-Extension-violet)](https://chromewebstore.google.com/detail/qodo-merge-ai-powered-cod/ephlnjeghhogofkifjloamocljapahnl)
 [![Static Badge](https://img.shields.io/badge/Pro-App-blue)](https://github.com/apps/qodo-merge-pro/)
 [![Static Badge](https://img.shields.io/badge/OpenSource-App-red)](https://github.com/apps/qodo-merge-pro-for-open-source/)
 [![Discord](https://badgen.net/badge/icon/discord?icon=discord&label&color=purple)](https://discord.com/channels/1057273017547378788/1126104260430528613)
@ -22,30 +22,45 @@ Qode Merge PR-Agent aims to help efficiently review and handle pull requests, by
 </a>
 </div>

-### [Documentation](https://pr-agent-docs.codium.ai/)
- See the [Installation Guide](https://qodo-merge-docs.qodo.ai/installation/) for instructions on installing Qode Merge PR-Agent on different platforms.
+### [Documentation](https://qodo-merge-docs.qodo.ai/)

- See the [Usage Guide](https://qodo-merge-docs.qodo.ai/usage-guide/) for instructions on running Qode Merge PR-Agent tools via different interfaces, such as CLI, PR Comments, or by automatically triggering them when a new PR is opened.
+- See the [Installation Guide](https://qodo-merge-docs.qodo.ai/installation/) for instructions on installing PR-Agent on different platforms.
+
+- See the [Usage Guide](https://qodo-merge-docs.qodo.ai/usage-guide/) for instructions on running PR-Agent tools via different interfaces, such as CLI, PR Comments, or by automatically triggering them when a new PR is opened.

 - See the [Tools Guide](https://qodo-merge-docs.qodo.ai/tools/) for a detailed description of the different tools, and the available configurations for each tool.


 ## Table of Contents
+
 - [News and Updates](#news-and-updates)
 - [Overview](#overview)
 - [Example results](#example-results)
 - [Try it now](#try-it-now)
- [PR-Agent Pro 💎](https://pr-agent-docs.codium.ai/overview/pr_agent_pro/)
+- [Qodo Merge 💎](https://qodo-merge-docs.qodo.ai/overview/pr_agent_pro/)
 - [How it works](#how-it-works)
 - [Why use PR-Agent?](#why-use-pr-agent)

 ## News and Updates

+### Jan 25, 2025
+
+The open-source GitHub organization was updated:
+`https://github.com/codium-ai/pr-agent` →
+`https://github.com/qodo-ai/pr-agent`
+
+The docker should be redirected automatically to the new location. 
+However, if you have any issues, please update the GitHub action docker image from
+`uses: Codium-ai/pr-agent@main`
+to
+`uses: qodo-ai/pr-agent@main`
+
+
 ### Jan 2, 2025

 New tool  [/Implement](https://qodo-merge-docs.qodo.ai/tools/implement/) (💎), which converts human code review discussions and feedback into ready-to-commit code changes.

-<kbd><img src="https://codium.ai/images/pr_agent/implement1.png" width="512"></kbd>
+<kbd><img src="https://www.qodo.ai/images/pr_agent/implement1.png" width="512"></kbd>


 ### Jan 1, 2025
@ -54,7 +69,7 @@ Update logic and [documentation](https://qodo-merge-docs.qodo.ai/usage-guide/cha

 ### December 30, 2024

-Following [feedback](https://research.kudelskisecurity.com/2024/08/29/careful-where-you-code-multiple-vulnerabilities-in-ai-powered-pr-agent/) from the community, we have addressed two vulnerabilities identified in the open-source PR-Agent project. The fixes are now included in the newly released version (v0.26), available as of today.
+Following feedback from the community, we have addressed two vulnerabilities identified in the open-source PR-Agent project. The fixes are now included in the newly released version (v0.26), available as of today.

 ### December 25, 2024

@ -62,11 +77,11 @@ The `review` tool previously included a legacy feature for providing code sugges

 ### December 2, 2024

-Open-source repositories can now freely use Qodo Merge Pro, and enjoy easy one-click installation using a marketplace [app](https://github.com/apps/qodo-merge-pro-for-open-source).
+Open-source repositories can now freely use Qodo Merge, and enjoy easy one-click installation using a marketplace [app](https://github.com/apps/qodo-merge-pro-for-open-source).

 <kbd><img src="https://github.com/user-attachments/assets/b0838724-87b9-43b0-ab62-73739a3a855c" width="512"></kbd>

-See [here](https://qodo-merge-docs.qodo.ai/installation/pr_agent_pro/) for more details about installing Qodo Merge Pro for private repositories.
+See [here](https://qodo-merge-docs.qodo.ai/installation/pr_agent_pro/) for more details about installing Qodo Merge for private repositories.


 ### November 18, 2024
@ -101,20 +116,20 @@ Supported commands per platform:
 |       | [Describe](https://qodo-merge-docs.qodo.ai/tools/describe/)                                                                                                | ✅ | ✅ | ✅ |      ✅       |
 |       | [Improve](https://qodo-merge-docs.qodo.ai/tools/improve/)                                                                                                 | ✅ | ✅ | ✅ |      ✅       |
 |       | [Ask](https://qodo-merge-docs.qodo.ai/tools/ask/)                                                                                                     | ✅ | ✅ | ✅ |      ✅       |
-|       | ⮑ [Ask on code lines](https://pr-agent-docs.codium.ai/tools/ask#ask-lines)                              | ✅ | ✅ |                    |              |
+|       | ⮑ [Ask on code lines](https://qodo-merge-docs.qodo.ai/tools/ask/#ask-lines)                              | ✅ | ✅ |                    |              |
 |       | [Update CHANGELOG](https://qodo-merge-docs.qodo.ai/tools/update_changelog/)                                                                                     | ✅ | ✅ | ✅ |      ✅       |
 |       | [Ticket Context](https://qodo-merge-docs.qodo.ai/core-abilities/fetching_ticket_context/) 💎  | ✅ | ✅ |  ✅                  |   |
 |       | [Utilizing Best Practices](https://qodo-merge-docs.qodo.ai/tools/improve/#best-practices) 💎  | ✅ | ✅ |  ✅                  |   |
 |       | [PR Chat](https://qodo-merge-docs.qodo.ai/chrome-extension/features/#pr-chat) 💎  | ✅ |  |                    |   |
 |       | [Suggestion Tracking](https://qodo-merge-docs.qodo.ai/tools/improve/#suggestion-tracking) 💎  | ✅ | ✅ |                    |   |
-|       | [CI Feedback](https://pr-agent-docs.codium.ai/tools/ci_feedback/) 💎                                    | ✅ |                    |                    |              |
-|       | [PR Documentation](https://pr-agent-docs.codium.ai/tools/documentation/) 💎                         | ✅ | ✅ |                   |              |
-|       | [Custom Labels](https://pr-agent-docs.codium.ai/tools/custom_labels/) 💎                                | ✅ | ✅ |                    |              |
-|       | [Analyze](https://pr-agent-docs.codium.ai/tools/analyze/) 💎                                            | ✅ | ✅ |                    |              |
-|       | [Similar Code](https://pr-agent-docs.codium.ai/tools/similar_code/) 💎                                  | ✅ |                    |                    |              |
-|       | [Custom Prompt](https://pr-agent-docs.codium.ai/tools/custom_prompt/) 💎                                | ✅ | ✅ | ✅ |              |
-|       | [Test](https://pr-agent-docs.codium.ai/tools/test/) 💎                                                  | ✅ | ✅ |                    |              |
-|       | [Implement](https://pr-agent-docs.codium.ai/tools/implement/) 💎                                        | ✅ | ✅ |         ✅          |              |
+|       | [CI Feedback](https://qodo-merge-docs.qodo.ai/tools/ci_feedback/) 💎                                    | ✅ |                    |                    |              |
+|       | [PR Documentation](https://qodo-merge-docs.qodo.ai/tools/documentation/) 💎                         | ✅ | ✅ |                   |              |
+|       | [Custom Labels](https://qodo-merge-docs.qodo.ai/tools/custom_labels/) 💎                                | ✅ | ✅ |                    |              |
+|       | [Analyze](https://qodo-merge-docs.qodo.ai/tools/analyze/) 💎                                            | ✅ | ✅ |                    |              |
+|       | [Similar Code](https://qodo-merge-docs.qodo.ai/tools/similar_code/) 💎                                  | ✅ |                    |                    |              |
+|       | [Custom Prompt](https://qodo-merge-docs.qodo.ai/tools/custom_prompt/) 💎                                | ✅ | ✅ | ✅ |              |
+|       | [Test](https://qodo-merge-docs.qodo.ai/tools/test/) 💎                                                  | ✅ | ✅ |                    |              |
+|       | [Implement](https://qodo-merge-docs.qodo.ai/tools/implement/) 💎                                        | ✅ | ✅ |         ✅          |              |
 |       |                                                                                                         |                    |                    |                    |              |
 | USAGE | [CLI](https://qodo-merge-docs.qodo.ai/usage-guide/automations_and_usage/#local-repo-cli)                                                                                                     | ✅ | ✅ | ✅ |      ✅       |
 |       | [App / webhook](https://qodo-merge-docs.qodo.ai/usage-guide/automations_and_usage/#github-app)                                                                                           | ✅ | ✅ | ✅ |      ✅       |
@ -128,41 +143,41 @@ Supported commands per platform:
 |       | [Dynamic context](https://qodo-merge-docs.qodo.ai/core-abilities/dynamic_context/)          | ✅ | ✅ | ✅ | ✅             |
 |       | [Self reflection](https://qodo-merge-docs.qodo.ai/core-abilities/self_reflection/)          | ✅ | ✅ | ✅ | ✅             |
 |       | [Static code analysis](https://qodo-merge-docs.qodo.ai/core-abilities/static_code_analysis/) 💎         | ✅ | ✅ | ✅ |              |
-|       | [Global and wiki configurations](https://pr-agent-docs.codium.ai/usage-guide/configuration_options/) 💎 | ✅ | ✅ | ✅ |              |
-|       | [PR interactive actions](https://www.codium.ai/images/pr_agent/pr-actions.mp4) 💎                       | ✅ |        ✅           |                    |              |
+|       | [Global and wiki configurations](https://qodo-merge-docs.qodo.ai/usage-guide/configuration_options/) 💎 | ✅ | ✅ | ✅ |              |
+|       | [PR interactive actions](https://www.qodo.ai/images/pr_agent/pr-actions.mp4) 💎                       | ✅ |        ✅           |                    |              |
 |       | [Impact Evaluation](https://qodo-merge-docs.qodo.ai/core-abilities/impact_evaluation/) 💎  | ✅ | ✅ |                    |   |
- 💎 means this feature is available only in [PR-Agent Pro](https://www.codium.ai/pricing/)
+- 💎 means this feature is available only in [Qodo-Merge](https://www.qodo.ai/pricing/)

 [//]: # (- Support for additional git providers is described in [here]&#40;./docs/Full_environments.md&#41;)
 ___

-‣ **Auto Description ([`/describe`](https://pr-agent-docs.codium.ai/tools/describe/))**: Automatically generating PR description - title, type, summary, code walkthrough and labels.
+‣ **Auto Description ([`/describe`](https://qodo-merge-docs.qodo.ai/tools/describe/))**: Automatically generating PR description - title, type, summary, code walkthrough and labels.
 \
-‣ **Auto Review ([`/review`](https://pr-agent-docs.codium.ai/tools/review/))**: Adjustable feedback about the PR, possible issues, security concerns, review effort and more.
+‣ **Auto Review ([`/review`](https://qodo-merge-docs.qodo.ai/tools/review/))**: Adjustable feedback about the PR, possible issues, security concerns, review effort and more.
 \
-‣ **Code Suggestions ([`/improve`](https://pr-agent-docs.codium.ai/tools/improve/))**: Code suggestions for improving the PR.
+‣ **Code Suggestions ([`/improve`](https://qodo-merge-docs.qodo.ai/tools/improve/))**: Code suggestions for improving the PR.
 \
-‣ **Question Answering ([`/ask ...`](https://pr-agent-docs.codium.ai/tools/ask/))**: Answering free-text questions about the PR.
+‣ **Question Answering ([`/ask ...`](https://qodo-merge-docs.qodo.ai/tools/ask/))**: Answering free-text questions about the PR.
 \
-‣ **Update Changelog ([`/update_changelog`](https://pr-agent-docs.codium.ai/tools/update_changelog/))**: Automatically updating the CHANGELOG.md file with the PR changes.
+‣ **Update Changelog ([`/update_changelog`](https://qodo-merge-docs.qodo.ai/tools/update_changelog/))**: Automatically updating the CHANGELOG.md file with the PR changes.
 \
-‣ **Find Similar Issue ([`/similar_issue`](https://pr-agent-docs.codium.ai/tools/similar_issues/))**: Automatically retrieves and presents similar issues.
+‣ **Find Similar Issue ([`/similar_issue`](https://qodo-merge-docs.qodo.ai/tools/similar_issues/))**: Automatically retrieves and presents similar issues.
 \
-‣ **Add Documentation 💎  ([`/add_docs`](https://pr-agent-docs.codium.ai/tools/documentation/))**: Generates documentation to methods/functions/classes that changed in the PR.
+‣ **Add Documentation 💎  ([`/add_docs`](https://qodo-merge-docs.qodo.ai/tools/documentation/))**: Generates documentation to methods/functions/classes that changed in the PR.
 \
-‣ **Generate Custom Labels 💎 ([`/generate_labels`](https://pr-agent-docs.codium.ai/tools/custom_labels/))**: Generates custom labels for the PR, based on specific guidelines defined by the user.
+‣ **Generate Custom Labels 💎 ([`/generate_labels`](https://qodo-merge-docs.qodo.ai/tools/custom_labels/))**: Generates custom labels for the PR, based on specific guidelines defined by the user.
 \
-‣ **Analyze 💎 ([`/analyze`](https://pr-agent-docs.codium.ai/tools/analyze/))**: Identify code components that changed in the PR, and enables to interactively generate tests, docs, and code suggestions for each component.
+‣ **Analyze 💎 ([`/analyze`](https://qodo-merge-docs.qodo.ai/tools/analyze/))**: Identify code components that changed in the PR, and enables to interactively generate tests, docs, and code suggestions for each component.
 \
-‣ **Test 💎 ([`/test`](https://pr-agent-docs.codium.ai/tools/test/))**: Generate tests for a selected component, based on the PR code changes.
+‣ **Test 💎 ([`/test`](https://qodo-merge-docs.qodo.ai/tools/test/))**: Generate tests for a selected component, based on the PR code changes.
 \
-‣ **Custom Prompt 💎 ([`/custom_prompt`](https://pr-agent-docs.codium.ai/tools/custom_prompt/))**: Automatically generates custom suggestions for improving the PR code, based on specific guidelines defined by the user.
+‣ **Custom Prompt 💎 ([`/custom_prompt`](https://qodo-merge-docs.qodo.ai/tools/custom_prompt/))**: Automatically generates custom suggestions for improving the PR code, based on specific guidelines defined by the user.
 \
-‣ **Generate Tests 💎 ([`/test component_name`](https://pr-agent-docs.codium.ai/tools/test/))**: Generates unit tests for a selected component, based on the PR code changes.
+‣ **Generate Tests 💎 ([`/test component_name`](https://qodo-merge-docs.qodo.ai/tools/test/))**: Generates unit tests for a selected component, based on the PR code changes.
 \
-‣ **CI Feedback 💎 ([`/checks ci_job`](https://pr-agent-docs.codium.ai/tools/ci_feedback/))**: Automatically generates feedback and analysis for a failed CI job.
+‣ **CI Feedback 💎 ([`/checks ci_job`](https://qodo-merge-docs.qodo.ai/tools/ci_feedback/))**: Automatically generates feedback and analysis for a failed CI job.
 \
-‣ **Similar Code 💎 ([`/find_similar_component`](https://pr-agent-docs.codium.ai/tools/similar_code/))**: Retrieves the most similar code components from inside the organization's codebase, or from open-source code.
+‣ **Similar Code 💎 ([`/find_similar_component`](https://qodo-merge-docs.qodo.ai/tools/similar_code/))**: Retrieves the most similar code components from inside the organization's codebase, or from open-source code.
 \
 ‣ **Implement 💎 ([`/implement`](https://qodo-merge-docs.qodo.ai/tools/implement/))**: Generates implementation code from review suggestions.
 ___
@ -220,19 +235,19 @@ It does not have 'edit' access to your repo, for example, so it cannot update th
 ![Review generation process](https://www.codium.ai/images/demo-2.gif)


-To set up your own PR-Agent, see the [Installation](https://pr-agent-docs.codium.ai/installation/) section below.
-Note that when you set your own PR-Agent or use CodiumAI hosted PR-Agent, there is no need to mention `@CodiumAI-Agent ...`. Instead, directly start with the command, e.g., `/ask ...`.
+To set up your own PR-Agent, see the [Installation](https://qodo-merge-docs.qodo.ai/installation/) section below.
+Note that when you set your own PR-Agent or use Qodo hosted PR-Agent, there is no need to mention `@CodiumAI-Agent ...`. Instead, directly start with the command, e.g., `/ask ...`.

 ---


-## PR-Agent Pro 💎
-[PR-Agent Pro](https://www.codium.ai/pricing/) is a hosted version of PR-Agent, provided by CodiumAI. It is available for a monthly fee, and provides the following benefits:
-1. **Fully managed** - We take care of everything for you - hosting, models, regular updates, and more. Installation is as simple as signing up and adding the PR-Agent app to your GitHub\GitLab\BitBucket repo.
-2. **Improved privacy** - No data will be stored or used to train models. PR-Agent Pro will employ zero data retention, and will use an OpenAI account with zero data retention.
-3. **Improved support** - PR-Agent Pro users will receive priority support, and will be able to request new features and capabilities.
-4. **Extra features** -In addition to the benefits listed above, PR-Agent Pro will emphasize more customization, and the usage of static code analysis, in addition to LLM logic, to improve results.
-See [here](https://qodo-merge-docs.qodo.ai/overview/pr_agent_pro/) for a list of features available in PR-Agent Pro.
+## Qodo Merge 💎
+[Qodo Merge](https://www.qodo.ai/pricing/) is a hosted version of PR-Agent, provided by Qodo. It is available for a monthly fee, and provides the following benefits:
+1. **Fully managed** - We take care of everything for you - hosting, models, regular updates, and more. Installation is as simple as signing up and adding the Qodo Merge app to your GitHub\GitLab\BitBucket repo.
+2. **Improved privacy** - No data will be stored or used to train models. Qodo Merge will employ zero data retention, and will use an OpenAI account with zero data retention.
+3. **Improved support** - Qodo Merge users will receive priority support, and will be able to request new features and capabilities.
+4. **Extra features** -In addition to the benefits listed above, Qodo Merge will emphasize more customization, and the usage of static code analysis, in addition to LLM logic, to improve results.
+See [here](https://qodo-merge-docs.qodo.ai/overview/pr_agent_pro/) for a list of features available in Qodo Merge.



@ -240,9 +255,9 @@ See [here](https://qodo-merge-docs.qodo.ai/overview/pr_agent_pro/) for a list of

 The following diagram illustrates PR-Agent tools and their flow:

-![PR-Agent Tools](https://codium.ai/images/pr_agent/diagram-v0.9.png)
+![PR-Agent Tools](https://www.qodo.ai/images/pr_agent/diagram-v0.9.png)

-Check out the [PR Compression strategy](https://pr-agent-docs.codium.ai/core-abilities/#pr-compression-strategy) page for more details on how we convert a code diff to a manageable LLM prompt
+Check out the [PR Compression strategy](https://qodo-merge-docs.qodo.ai/core-abilities/#pr-compression-strategy) page for more details on how we convert a code diff to a manageable LLM prompt

 ## Why use PR-Agent?

@ -251,7 +266,7 @@ A reasonable question that can be asked is: `"Why use PR-Agent? What makes it st
 Here are some advantages of PR-Agent:

 - We emphasize **real-life practical usage**. Each tool (review, improve, ask, ...) has a single GPT-4 call, no more. We feel that this is critical for realistic team usage - obtaining an answer quickly (~30 seconds) and affordably.
- Our [PR Compression strategy](https://pr-agent-docs.codium.ai/core-abilities/#pr-compression-strategy)  is a core ability that enables to effectively tackle both short and long PRs.
+- Our [PR Compression strategy](https://qodo-merge-docs.qodo.ai/core-abilities/#pr-compression-strategy)  is a core ability that enables to effectively tackle both short and long PRs.
 - Our JSON prompting strategy enables to have **modular, customizable tools**. For example, the '/review' tool categories can be controlled via the [configuration](pr_agent/settings/configuration.toml) file. Adding additional categories is easy and accessible.
 - We support **multiple git providers** (GitHub, Gitlab, Bitbucket), **multiple ways** to use the tool (CLI, GitHub Action, GitHub App, Docker, ...), and **multiple models** (GPT-4, GPT-3.5, Anthropic, Cohere, Llama2).

@ -263,24 +278,24 @@ Here are some advantages of PR-Agent:
 - If you host PR-Agent with your OpenAI API key, it is between you and OpenAI. You can read their API data privacy policy here:
 https://openai.com/enterprise-privacy

-### CodiumAI-hosted PR-Agent Pro 💎
+### Qodo-hosted Qodo Merge 💎

- When using PR-Agent Pro 💎, hosted by CodiumAI, we will not store any of your data, nor will we use it for training. You will also benefit from an OpenAI account with zero data retention.
+- When using Qodo Merge 💎, hosted by Qodo, we will not store any of your data, nor will we use it for training. You will also benefit from an OpenAI account with zero data retention.

- For certain clients, CodiumAI-hosted PR-Agent Pro will use CodiumAI’s proprietary models — if this is the case, you will be notified.
+- For certain clients, Qodo-hosted Qodo Merge will use Qodo’s proprietary models — if this is the case, you will be notified.

- No passive collection of Code and Pull Requests’ data — PR-Agent will be active only when you invoke it, and it will then extract and analyze only data relevant to the executed command and queried pull request.
+- No passive collection of Code and Pull Requests’ data — Qodo Merge will be active only when you invoke it, and it will then extract and analyze only data relevant to the executed command and queried pull request.

-### PR-Agent Chrome extension
+### Qodo Merge Chrome extension

- The [PR-Agent Chrome extension](https://chromewebstore.google.com/detail/pr-agent-chrome-extension/ephlnjeghhogofkifjloamocljapahnl) serves solely to modify the visual appearance of a GitHub PR screen. It does not transmit any user's repo or pull request code. Code is only sent for processing when a user submits a GitHub comment that activates a PR-Agent tool, in accordance with the standard privacy policy of PR-Agent.
+- The [Qodo Merge Chrome extension](https://chromewebstore.google.com/detail/qodo-merge-ai-powered-cod/ephlnjeghhogofkifjloamocljapahnl) serves solely to modify the visual appearance of a GitHub PR screen. It does not transmit any user's repo or pull request code. Code is only sent for processing when a user submits a GitHub comment that activates a PR-Agent tool, in accordance with the standard privacy policy of Qodo-Merge.

 ## Links

 [![Join our Discord community](https://raw.githubusercontent.com/Codium-ai/codiumai-vscode-release/main/media/docs/Joincommunity.png)](https://discord.gg/kG35uSHDBc)

 - Discord community: https://discord.gg/kG35uSHDBc
- CodiumAI site: https://codium.ai
- Blog: https://www.codium.ai/blog/
- Troubleshooting: https://www.codium.ai/blog/technical-faq-and-troubleshooting/
- Support: support@codium.ai
+- Qodo site: https://www.qodo.ai/
+- Blog: https://www.qodo.ai/blog/
+- Troubleshooting: https://www.qodo.ai/blog/technical-faq-and-troubleshooting/
+- Support: support@qodo.ai
--- a/SECURITY.md
+++ b/SECURITY.md
@ -0,0 +1,62 @@
+# Security Policy
+
+PR-Agent is an open-source tool to help efficiently review and handle pull requests. Qodo Merge is a paid version of PR-Agent, designed for companies and teams that require additional features and capabilities. 
+
+This document describes the security policy of PR-Agent. For Qodo Merge's security policy, see [here](https://qodo-merge-docs.qodo.ai/overview/data_privacy/#qodo-merge).
+
+## PR-Agent Self-Hosted Solutions
+
+When using PR-Agent with your OpenAI (or other LLM provider) API key, the security relationship is directly between you and the provider. We do not send your code to Qodo servers.
+
+Types of [self-hosted solutions](https://qodo-merge-docs.qodo.ai/installation):
+- Locally
+- GitHub integration
+- GitLab integration
+- BitBucket integration
+- Azure DevOps integration
+
+
+## PR-Agent Supported Versions
+
+This section outlines which versions of PR-Agent are currently supported with security updates.
+
+### Docker Deployment Options
+
+#### Latest Version
+
+For the most recent updates, use our latest Docker image which is automatically built nightly:
+```yaml
+uses: qodo-ai/pr-agent@main
+```
+
+#### Specific Release Version
+
+For a fixed version, you can pin your action to a specific release version. Browse available releases at:
+[PR-Agent Releases](https://github.com/qodo-ai/pr-agent/releases)
+
+For example, to github action:
+
+```yaml
+steps:
+  - name: PR Agent action step
+    id: pragent
+    uses: docker://codiumai/pr-agent:0.26-github_action
+```
+
+#### Enhanced Security with Docker Digest
+
+For maximum security, you can specify the Docker image using its digest:
+```yaml
+steps:
+  - name: PR Agent action step
+    id: pragent
+    uses: docker://codiumai/pr-agent@sha256:14165e525678ace7d9b51cda8652c2d74abb4e1d76b57c4a6ccaeba84663cc64
+```
+
+## Reporting a Vulnerability
+
+We take the security of PR-Agent seriously. If you discover a security vulnerability, please report it immediately to:
+
+Email: tal.r@qodo.ai
+
+Please include a description of the vulnerability, steps to reproduce, and the affected PR-Agent version.
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@ -4,7 +4,7 @@ WORKDIR /app
 ADD pyproject.toml .
 ADD requirements.txt .
 ADD docs docs
-RUN pip install . && rm pyproject.toml requirements.txt
+RUN pip install --no-cache-dir . && rm pyproject.toml requirements.txt
 ENV PYTHONPATH=/app

 FROM base AS github_app
@ -33,7 +33,7 @@ CMD ["python", "pr_agent/servers/azuredevops_server_webhook.py"]

 FROM base AS test
 ADD requirements-dev.txt .
-RUN pip install -r requirements-dev.txt && rm requirements-dev.txt
+RUN pip install --no-cache-dir -r requirements-dev.txt && rm requirements-dev.txt
 ADD pr_agent pr_agent
 ADD tests tests

--- a/docker/Dockerfile.lambda
+++ b/docker/Dockerfile.lambda
@ -5,8 +5,8 @@ RUN yum update -y && \
    yum clean all

 ADD pyproject.toml requirements.txt .
-RUN pip install . && rm pyproject.toml
-RUN pip install mangum==0.17.0
+RUN pip install --no-cache-dir . && rm pyproject.toml
+RUN pip install --no-cache-dir mangum==0.17.0
 COPY pr_agent/ ${LAMBDA_TASK_ROOT}/pr_agent/

 CMD ["pr_agent.servers.serverless.serverless"]
--- a/docs/docs/chrome-extension/data_privacy.md
+++ b/docs/docs/chrome-extension/data_privacy.md
@ -1,4 +1,4 @@
 We take your code's security and privacy seriously:

 - The Chrome extension will not send your code to any external servers.
- For private repositories, we will first validate the user's identity and permissions. After authentication, we generate responses using the existing Qodo Merge Pro integration.
+- For private repositories, we will first validate the user's identity and permissions. After authentication, we generate responses using the existing Qodo Merge integration.
--- a/docs/docs/chrome-extension/features.md
+++ b/docs/docs/chrome-extension/features.md
@ -8,7 +8,7 @@ To enable private chat, simply install the Qodo Merge Chrome extension. After in
 This chat session is **private**, and won't be visible to other users.

 All open-source repositories are supported.
-For private repositories, you will also need to install Qodo Merge Pro, After installation, make sure to open at least one new PR to fully register your organization. Once done, you can chat with both new and existing PRs across all installed repositories.
+For private repositories, you will also need to install Qodo Merge. After installation, make sure to open at least one new PR to fully register your organization. Once done, you can chat with both new and existing PRs across all installed repositories.

 #### Context-aware PR chat

--- a/docs/docs/chrome-extension/index.md
+++ b/docs/docs/chrome-extension/index.md
@ -4,8 +4,8 @@ With a single-click installation you will gain access to a context-aware chat on

 The extension is powered by top code models like Claude 3.5 Sonnet and GPT4. All the extension's features are free to use on public repositories.

-For private repositories, you will need to install [Qodo Merge Pro](https://github.com/apps/qodo-merge-pro){:target="_blank"} in addition to the extension  (Quick GitHub app setup with a 14-day free trial. No credit card needed).
-For a demonstration of how to install Qodo Merge Pro and use it with the Chrome extension, please refer to the tutorial video at the provided [link](https://codium.ai/images/pr_agent/private_repos.mp4){:target="_blank"}.
+For private repositories, you will need to install [Qodo Merge](https://github.com/apps/qodo-merge-pro){:target="_blank"} in addition to the extension  (Quick GitHub app setup with a 14-day free trial. No credit card needed).
+For a demonstration of how to install Qodo Merge and use it with the Chrome extension, please refer to the tutorial video at the provided [link](https://codium.ai/images/pr_agent/private_repos.mp4){:target="_blank"}.

 <img src="https://codium.ai/images/pr_agent/PR-AgentChat.gif" width="768">

--- a/docs/docs/core-abilities/auto_best_practices.md
+++ b/docs/docs/core-abilities/auto_best_practices.md
@ -0,0 +1,69 @@
+# Auto Best Practices 💎
+`Supported Git Platforms: GitHub`
+
+## Overview
+
+![Auto best practice suggestion graph](https://www.qodo.ai/images/pr_agent/auto_best_practices_graph.png){width=684}
+
+> Note - enabling a [Wiki](https://qodo-merge-docs.qodo.ai/usage-guide/enabling_a_wiki/) is required for this feature.
+
+### Finding Code Problems - Exploration Phase
+
+The `improve` tool identifies potential issues, problems and bugs in Pull Request (PR) code changes. 
+Rather than focusing on minor issues like code style or formatting, the tool intelligently analyzes code to detect meaningful problems. 
+
+The analysis intentionally takes a flexible, _exploratory_ approach to identify meaningful potential issues, allowing the tool to surface relevant code suggestions without being constrained by predefined categories.
+
+### Tracking Implemented Suggestions
+
+Qodo Merge features a novel [tracking system](https://qodo-merge-docs.qodo.ai/tools/improve/#suggestion-tracking) that automatically detects when PR authors implement AI-generated code suggestions. 
+All accepted suggestions are aggregated in a repository-specific wiki page called [`.pr_agent_accepted_suggestions`](https://github.com/qodo-ai/pr-agent/wiki/.pr_agent_accepted_suggestions)
+
+
+### Learning and Applying Auto Best Practices
+
+Monthly, Qodo Merge analyzes the collection of accepted suggestions to generate repository-specific best practices, stored in [`.pr_agent_auto_best_practices`](https://github.com/qodo-ai/pr-agent/wiki/.pr_agent_auto_best_practices) wiki file.
+These best practices reflect recurring patterns in accepted code improvements.
+
+The `improve` tool will incorporate these best practices as an additional analysis layer, checking PR code changes against known patterns of previously accepted improvements.
+This creates a two-phase analysis:
+
+1. Open exploration for general code issues
+2. Targeted checking against established best practices - exploiting the knowledge gained from past suggestions
+
+By keeping these phases decoupled, the tool remains free to discover new or unseen issues and problems, while also learning from past experiences.
+
+
+When presenting the suggestions generated by the `improve` tool, Qodo Merge will add a dedicated label for each suggestion generated from the auto best practices - 'Learned best practice':
+
+![Auto best practice suggestion](https://www.qodo.ai/images/pr_agent/auto_best_practices.png){width=684}
+
+
+## Auto Best Practices vs Custom Best Practices
+
+Teams and companies can also manually define their own [custom best practices](https://qodo-merge-docs.qodo.ai/tools/improve/#best-practices) in Qodo Merge. 
+
+When custom best practices exist, Qodo Merge will still generate an 'auto best practices' wiki file, though it won't be used by the `improve` tool. 
+However, this auto-generated file can still serve two valuable purposes:
+
+1. It can help enhance your custom best practices with additional insights derived from suggestions your team found valuable enough to implement
+2. It demonstrates effective patterns for writing AI-friendly best practices
+
+Even when using custom best practices, we recommend regularly reviewing the auto best practices file to refine your custom rules.
+
+## Relevant configurations
+
+```toml
+[auto_best_practices]
+# Disable all auto best practices usage or generation
+enable_auto_best_practices = true  
+
+# Disable usage of auto best practices file in the 'improve' tool
+utilize_auto_best_practices = true 
+
+# Extra instructions to the auto best practices generation prompt
+extra_instructions = ""            
+
+# Max number of patterns to be detected
+max_patterns = 5                   
+```
--- a/docs/docs/core-abilities/index.md
+++ b/docs/docs/core-abilities/index.md
@ -2,6 +2,7 @@
 Qodo Merge utilizes a variety of core abilities to provide a comprehensive and efficient code review experience. These abilities include:

 - [Fetching ticket context](https://qodo-merge-docs.qodo.ai/core-abilities/fetching_ticket_context/)
+- [Auto best practices](https://qodo-merge-docs.qodo.ai/core-abilities/auto_best_practices/)
 - [Local and global metadata](https://qodo-merge-docs.qodo.ai/core-abilities/metadata/)
 - [Dynamic context](https://qodo-merge-docs.qodo.ai/core-abilities/dynamic_context/)
 - [Self-reflection](https://qodo-merge-docs.qodo.ai/core-abilities/self_reflection/)
@ -18,6 +19,7 @@ Here are some additional technical blogs from Qodo, that delve deeper into the c
 These resources provide more comprehensive insights into leveraging LLMs for software development.

 ### Code Generation and LLMs
+- [Effective AI code suggestions: less is more](https://www.qodo.ai/blog/effective-code-suggestions-llms-less-is-more/)
 - [State-of-the-art Code Generation with AlphaCodium – From Prompt Engineering to Flow Engineering](https://www.qodo.ai/blog/qodoflow-state-of-the-art-code-generation-for-code-contests/)
 - [RAG for a Codebase with 10k Repos](https://www.qodo.ai/blog/rag-for-large-scale-code-repos/)

--- a/docs/docs/faq/index.md
+++ b/docs/docs/faq/index.md
@ -61,7 +61,7 @@ ___

    When you self-host the [open-source](https://github.com/Codium-ai/pr-agent) version, you use your own keys.

-    Qodo Merge Pro with SaaS deployment is a hosted version of Qodo Merge, where Qodo manages the infrastructure and the keys.
+    Qodo Merge with SaaS deployment is a hosted version of Qodo Merge, where Qodo manages the infrastructure and the keys.
    For enterprise customers, on-prem deployment is also available. [Contact us](https://www.codium.ai/contact/#pricing) for more information.
 ___

--- a/docs/docs/index.md
+++ b/docs/docs/index.md
@ -1,15 +1,16 @@
 # Overview

-Qodo Merge is an open-source tool to help efficiently review and handle pull requests.
+[PR-Agent](https://github.com/Codium-ai/pr-agent) is an open-source tool to help efficiently review and handle pull requests. 
+Qodo Merge is a hosted version of PR-Agent, designed for companies and teams that require additional features and capabilities

 - See the [Installation Guide](./installation/index.md) for instructions on installing and running the tool on different git platforms.

- See the [Usage Guide](./usage-guide/index.md) for instructions on running the Qodo Merge commands via different interfaces, including _CLI_, _online usage_, or by _automatically triggering_ them when a new PR is opened.
+- See the [Usage Guide](./usage-guide/index.md) for instructions on running commands via different interfaces, including _CLI_, _online usage_, or by _automatically triggering_ them when a new PR is opened.

 - See the [Tools Guide](./tools/index.md) for a detailed description of the different tools.


-## Qodo Merge Docs Smart Search
+## Docs Smart Search

 To search the documentation site using natural language:

@ -18,51 +19,45 @@ To search the documentation site using natural language:
   - A pull request where Qodo Merge is installed
   - A [PR Chat](https://qodo-merge-docs.qodo.ai/chrome-extension/features/#pr-chat)

-2) Qodo Merge will respond with an [answer](https://github.com/Codium-ai/pr-agent/pull/1241#issuecomment-2365259334) that includes relevant documentation links.
+2) The bot will respond with an [answer](https://github.com/Codium-ai/pr-agent/pull/1241#issuecomment-2365259334) that includes relevant documentation links.


 ## Qodo Merge Features

-Qodo Merge offers extensive pull request functionalities across various git providers.
+Qodo Merge offers extensive pull request functionalities across various git providers:

-|       |                                                                                                         | GitHub             | GitLab             | Bitbucket          | Azure DevOps |
-|-------|---------------------------------------------------------------------------------------------------------|:--------------------:|:--------------------:|:--------------------:|:------------:|
-| TOOLS | [Review](https://qodo-merge-docs.qodo.ai/tools/review/)                                                                                                  | ✅ | ✅ | ✅ |      ✅       |
-|       | [Describe](https://qodo-merge-docs.qodo.ai/tools/describe/)                                                                                                | ✅ | ✅ | ✅ |      ✅       |
-|       | [Improve](https://qodo-merge-docs.qodo.ai/tools/improve/)                                                                                                 | ✅ | ✅ | ✅ |      ✅       |
-|       | [Ask](https://qodo-merge-docs.qodo.ai/tools/ask/)                                                                                                     | ✅ | ✅ | ✅ |      ✅       |
-|       | ⮑ [Ask on code lines](https://pr-agent-docs.codium.ai/tools/ask#ask-lines)                              | ✅ | ✅ |                    |              |
-|       | [Update CHANGELOG](https://qodo-merge-docs.qodo.ai/tools/update_changelog/)                                                                                     | ✅ | ✅ | ✅ |      ✅       |
-|       | [Ticket Context](https://qodo-merge-docs.qodo.ai/core-abilities/fetching_ticket_context/) 💎  | ✅ | ✅ |  ✅                  |   |
-|       | [Utilizing Best Practices](https://qodo-merge-docs.qodo.ai/tools/improve/#best-practices) 💎  | ✅ | ✅ |  ✅                  |   |
-|       | [PR Chat](https://qodo-merge-docs.qodo.ai/chrome-extension/features/#pr-chat) 💎  | ✅ |  |                    |   |
-|       | [Suggestion Tracking](https://qodo-merge-docs.qodo.ai/tools/improve/#suggestion-tracking) 💎  | ✅ | ✅ |                    |   |
-|       | [CI Feedback](https://pr-agent-docs.codium.ai/tools/ci_feedback/) 💎                                    | ✅ |                    |                    |              |
-|       | [PR Documentation](https://pr-agent-docs.codium.ai/tools/documentation/) 💎                         | ✅ | ✅ |                   |              |
-|       | [Custom Labels](https://pr-agent-docs.codium.ai/tools/custom_labels/) 💎                                | ✅ | ✅ |                    |              |
-|       | [Analyze](https://pr-agent-docs.codium.ai/tools/analyze/) 💎                                            | ✅ | ✅ |                    |              |
-|       | [Similar Code](https://pr-agent-docs.codium.ai/tools/similar_code/) 💎                                  | ✅ |                    |                    |              |
-|       | [Custom Prompt](https://pr-agent-docs.codium.ai/tools/custom_prompt/) 💎                                | ✅ | ✅ | ✅ |              |
+|       |                                                                                                                       | GitHub | Gitlab | Bitbucket | Azure DevOps |
+|-------|-----------------------------------------------------------------------------------------------------------------------|:------:|:------:|:---------:|:------------:|
+| TOOLS | Review                                                                                                                |   ✅    |   ✅    |   ✅       |      ✅      |
+|       | ⮑ Incremental                                                                                                         |   ✅    |        |            |              |
+|       | Ask                                                                                                                   |   ✅    |   ✅    |   ✅        |      ✅      |
+|       | Describe                                                                                                              |   ✅    |   ✅    |   ✅        |      ✅      |
+|       | ⮑ [Inline file summary](https://qodo-merge-docs.qodo.ai/tools/describe/#inline-file-summary){:target="_blank"} 💎     |   ✅    |   ✅    |           |      ✅      |
+|       | Improve                                                                                                               |   ✅    |   ✅    |   ✅        |      ✅      |
+|       | ⮑ Extended                                                                                                            |   ✅    |   ✅    |   ✅        |      ✅      |
+|       | [Custom Prompt](./tools/custom_prompt.md){:target="_blank"} 💎                                                        |   ✅    |   ✅    |   ✅        |      ✅      |
+|       | Reflect and Review                                                                                                    |   ✅    |   ✅    |   ✅        |      ✅      |
+|       | Update CHANGELOG.md                                                                                                   |   ✅    |   ✅    |   ✅        |      ️       |
+|       | Find Similar Issue                                                                                                    |   ✅    |        |             |      ️       |
+|       | [Add PR Documentation](./tools/documentation.md){:target="_blank"} 💎                                                 |   ✅    |   ✅    |          |      ✅      |
+|       | [Generate Custom Labels](./tools/describe.md#handle-custom-labels-from-the-repos-labels-page-💎){:target="_blank"} 💎 |   ✅    |   ✅    |            |      ✅      |
+|       | [Analyze PR Components](./tools/analyze.md){:target="_blank"} 💎                                                      |   ✅    |   ✅    |       |      ✅      |
 |       | [Test](https://pr-agent-docs.codium.ai/tools/test/) 💎                                                                | ✅ |   ✅    |                    |              |
 |       | [Implement](https://pr-agent-docs.codium.ai/tools/implement/) 💎                                                      | ✅ |   ✅    |          ✅         |              |
-|       |                                                                                                         |                    |                    |                    |              |
-| USAGE | [CLI](https://qodo-merge-docs.qodo.ai/usage-guide/automations_and_usage/#local-repo-cli)                                                                                                     | ✅ | ✅ | ✅ |      ✅       |
-|       | [App / webhook](https://qodo-merge-docs.qodo.ai/usage-guide/automations_and_usage/#github-app)                                                                                           | ✅ | ✅ | ✅ |      ✅       |
-|       | [Tagging bot](https://github.com/Codium-ai/pr-agent#try-it-now)                                                                                             | ✅ |                    |                    |              |
-|       | [Actions](https://qodo-merge-docs.qodo.ai/installation/github/#run-as-a-github-action)                                                                                                 | ✅ |✅| ✅ |✅|
-|       |                                                                                                         |                    |                    |                    |              |
-| CORE  | [PR compression](https://qodo-merge-docs.qodo.ai/core-abilities/compression_strategy/)                                                                  | ✅ | ✅ | ✅ |      ✅       |
+|       |                                                                                                                       |        |        |            |      ️       |
+| USAGE | CLI                                                                                                                   |   ✅    |   ✅    |   ✅       |      ✅      |
+|       | App / webhook                                                                                                         |   ✅    |   ✅    |    ✅        |      ✅      |
+|       | Actions                                                                                                               |   ✅    |        |            |      ️       |
+|       |                                                                                                                       |        |        |            |
+| CORE  | PR compression                                                                                                        |   ✅    |   ✅    |   ✅       |   ✅        |
+|       | Repo language prioritization                                                                                          |   ✅    |   ✅    |   ✅       |   ✅        |
 |       | Adaptive and token-aware file patch fitting                                                                           |   ✅    |   ✅    |   ✅     |   ✅        |
-|       | [Multiple models support](https://qodo-merge-docs.qodo.ai/usage-guide/changing_a_model/)                                                                                 | ✅ | ✅ | ✅ |      ✅       |
-|       | [Local and global metadata](https://qodo-merge-docs.qodo.ai/core-abilities/metadata/)          | ✅ | ✅ | ✅ | ✅             |
-|       | [Dynamic context](https://qodo-merge-docs.qodo.ai/core-abilities/dynamic_context/)          | ✅ | ✅ | ✅ | ✅             |
-|       | [Self reflection](https://qodo-merge-docs.qodo.ai/core-abilities/self_reflection/)          | ✅ | ✅ | ✅ | ✅             |
-|       | [Static code analysis](https://qodo-merge-docs.qodo.ai/core-abilities/static_code_analysis/) 💎         | ✅ | ✅ | ✅ |              |
-|       | [Global and wiki configurations](https://pr-agent-docs.codium.ai/usage-guide/configuration_options/) 💎 | ✅ | ✅ | ✅ |              |
-|       | [PR interactive actions](https://www.codium.ai/images/pr_agent/pr-actions.mp4) 💎                       | ✅ |        ✅           |                    |              |
-|       | [Impact Evaluation](https://qodo-merge-docs.qodo.ai/core-abilities/impact_evaluation/) 💎  | ✅ | ✅ |                    |   |
+|       | Multiple models support                                                                                               |   ✅    |   ✅    |   ✅       |   ✅        |
+|       | Incremental PR review                                                                                                 |   ✅    |        |            |           |
+|       | [Static code analysis](./tools/analyze.md/){:target="_blank"} 💎                                                      |   ✅    |   ✅    |    ✅    |   ✅        |
+|       | [Multiple configuration options](./usage-guide/configuration_options.md){:target="_blank"} 💎                         |   ✅    |   ✅    |    ✅    |   ✅        |

-💎 marks a feature available only in [Qodo Merge Pro](https://www.qodo.ai/pricing/){:target="_blank"}
+💎 marks a feature available only in [Qodo Merge](https://www.codium.ai/pricing/){:target="_blank"}, and not in the open-source version.


 ## Example Results
@ -98,4 +93,4 @@ The following diagram illustrates Qodo Merge tools and their flow:

 ![Qodo Merge Tools](https://codium.ai/images/pr_agent/diagram-v0.9.png)

-Check out the [core abilities](core-abilities/index.md) page for a comprehensive overview of the variety of core abilities used by Qodo Merge.
+Check out the [PR Compression strategy](core-abilities/index.md) page for more details on how we convert a code diff to a manageable LLM prompt
--- a/docs/docs/installation/azure.md
+++ b/docs/docs/installation/azure.md
@ -1,5 +1,5 @@
 ## Azure DevOps Pipeline
-You can use a pre-built Action Docker image to run Qodo Merge as an Azure devops pipeline.
+You can use a pre-built Action Docker image to run PR-Agent as an Azure devops pipeline.
 add the following file to your repository under `azure-pipelines.yml`:
 ```yaml
 # Opt out of CI triggers
@ -52,7 +52,7 @@ stages:
 This script will run Qodo Merge on every new merge request, with the `improve`, `review`, and `describe` commands.
 Note that you need to export the `azure_devops__pat` and `OPENAI_KEY` variables in the Azure DevOps pipeline settings (Pipelines -> Library -> + Variable group):

-![Qodo Merge Pro](https://codium.ai/images/pr_agent/azure_devops_pipeline_secrets.png){width=468}
+![Qodo Merge](https://codium.ai/images/pr_agent/azure_devops_pipeline_secrets.png){width=468}

 Make sure to give pipeline permissions to the `pr_agent` variable group.

@ -80,7 +80,7 @@ org = "https://dev.azure.com/YOUR_ORGANIZATION/"
 # pat = "YOUR_PAT_TOKEN" needed only if using PAT for authentication
 ```

-### Azure DevOps Webhook
+## Azure DevOps Webhook

 To trigger from an Azure webhook, you need to manually [add a webhook](https://learn.microsoft.com/en-us/azure/devops/service-hooks/services/webhooks?view=azure-devops).
 Use the "Pull request created" type to trigger a review, or "Pull request commented on" to trigger any supported comment with /<command> <args> comment on the relevant PR. Note that for the "Pull request commented on" trigger, only API v2.0 is supported.
--- a/docs/docs/installation/bitbucket.md
+++ b/docs/docs/installation/bitbucket.md
@ -27,10 +27,6 @@ You can get a Bitbucket token for your repository by following Repository Settin
 Note that comments on a PR are not supported in Bitbucket Pipeline.


-## Run using CodiumAI-hosted Bitbucket app 💎
-
-Please contact visit [Qodo Merge Pro](https://www.codium.ai/pricing/) if you're interested in a hosted BitBucket app solution that provides full functionality including PR reviews and comment handling. It's based on the [bitbucket_app.py](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/git_providers/bitbucket_provider.py) implementation.
-

 ## Bitbucket Server and Data Center

--- a/docs/docs/installation/github.md
+++ b/docs/docs/installation/github.md
@ -1,6 +1,6 @@
 ## Run as a GitHub Action

-You can use our pre-built Github Action Docker image to run Qodo Merge as a Github Action.
+You can use our pre-built Github Action Docker image to run PR-Agent as a Github Action.

 1) Add the following file to your repository under `.github/workflows/pr_agent.yml`:

@ -21,7 +21,7 @@ jobs:
    steps:
      - name: PR Agent action step
        id: pragent
-        uses: Codium-ai/pr-agent@main
+        uses: qodo-ai/pr-agent@main
        env:
          OPENAI_KEY: ${{ secrets.OPENAI_KEY }}
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
--- a/docs/docs/installation/gitlab.md
+++ b/docs/docs/installation/gitlab.md
@ -1,5 +1,5 @@
 ## Run as a GitLab Pipeline
-You can use a pre-built Action Docker image to run Qodo Merge as a GitLab pipeline. This is a simple way to get started with Qodo Merge without setting up your own server.
+You can use a pre-built Action Docker image to run PR-Agent as a GitLab pipeline. This is a simple way to get started with Qodo Merge without setting up your own server.

 (1) Add the following file to your repository under `.gitlab-ci.yml`:
 ```yaml
--- a/docs/docs/installation/index.md
+++ b/docs/docs/installation/index.md
@ -1,21 +1,17 @@
 # Installation

-## Self-hosted Qodo Merge
-If you choose to host your own Qodo Merge, you first need to acquire two tokens:
+## Self-hosted PR-Agent

-1. An OpenAI key from [here](https://platform.openai.com/api-keys){:target="_blank"}, with access to GPT-4 (or a key for other [language models](https://qodo-merge-docs.qodo.ai/usage-guide/changing_a_model/), if you prefer).
-2. A GitHub\GitLab\BitBucket personal access token (classic), with the repo scope. [GitHub from [here](https://github.com/settings/tokens){:target="_blank"}]
-
-There are several ways to use self-hosted Qodo Merge:
+There are several ways to use self-hosted PR-Agent:

 - [Locally](./locally.md)
- [GitHub](./github.md)
- [GitLab](./gitlab.md)
- [BitBucket](./bitbucket.md)
- [Azure DevOps](./azure.md)
+- [GitHub integration](./github.md)
+- [GitLab integration](./gitlab.md)
+- [BitBucket integration](./bitbucket.md)
+- [Azure DevOps integration](./azure.md)

-## Qodo Merge Pro 💎
-Qodo Merge Pro, an app hosted by CodiumAI for GitHub\GitLab\BitBucket, is also available.
+## Qodo Merge 💎
+Qodo Merge, an app hosted by QodoAI for GitHub\GitLab\BitBucket, is also available.
 <br>
-With Qodo Merge Pro, installation is as simple as signing up and adding the Qodo Merge app to your relevant repo.
-See [here](https://qodo-merge-docs.qodo.ai/installation/pr_agent_pro/) for more details.
+With Qodo Merge, installation is as simple as adding the Qodo Merge app to your relevant repositories.
+See [here](https://qodo-merge-docs.qodo.ai/installation/qodo_merge/) for more details.
--- a/docs/docs/installation/locally.md
+++ b/docs/docs/installation/locally.md
@ -1,3 +1,77 @@
+To run PR-Agent locally, you first need to acquire two keys:
+
+1. An OpenAI key from [here](https://platform.openai.com/api-keys){:target="_blank"}, with access to GPT-4 (or a key for other [language models](https://qodo-merge-docs.qodo.ai/usage-guide/changing_a_model/), if you prefer).
+2. A personal access token from your Git platform (GitHub, GitLab, BitBucket) with repo scope. GitHub token, for example, can be issued from [here](https://github.com/settings/tokens){:target="_blank"}
+
+
+## Using Docker image
+
+A list of the relevant tools can be found in the [tools guide](../tools/ask.md).
+
+To invoke a tool (for example `review`), you can run PR-Agent directly from the Docker image. Here's how:
+
+- For GitHub:
+    ```
+    docker run --rm -it -e OPENAI.KEY=<your key> -e GITHUB.USER_TOKEN=<your token> codiumai/pr-agent:latest --pr_url <pr_url> review
+    ```
+    If you are using GitHub enterprise server, you need to specify the custom url as variable.
+    For example, if your GitHub server is at `https://github.mycompany.com`, add the following to the command:
+    ```
+    -e GITHUB.BASE_URL=https://github.mycompany.com/api/v3
+    ```
+
+- For GitLab:
+    ```
+    docker run --rm -it -e OPENAI.KEY=<your key> -e CONFIG.GIT_PROVIDER=gitlab -e GITLAB.PERSONAL_ACCESS_TOKEN=<your token> codiumai/pr-agent:latest --pr_url <pr_url> review
+    ```
+
+    If you have a dedicated GitLab instance, you need to specify the custom url as variable:
+    ```
+    -e GITLAB.URL=<your gitlab instance url>
+    ```
+
+- For BitBucket:
+    ```
+    docker run --rm -it -e CONFIG.GIT_PROVIDER=bitbucket -e OPENAI.KEY=$OPENAI_API_KEY -e BITBUCKET.BEARER_TOKEN=$BITBUCKET_BEARER_TOKEN codiumai/pr-agent:latest --pr_url=<pr_url> review
+    ```
+
+For other git providers, update `CONFIG.GIT_PROVIDER` accordingly and check the [`pr_agent/settings/.secrets_template.toml`](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/settings/.secrets_template.toml) file for environment variables expected names and values.
+
+### Utilizing environment variables
+
+It is also possible to provide or override the configuration by setting the corresponding environment variables.
+You can define the corresponding environment variables by following this convention: `<TABLE>__<KEY>=<VALUE>` or `<TABLE>.<KEY>=<VALUE>`.
+The `<TABLE>` refers to a table/section in a configuration file and `<KEY>=<VALUE>` refers to the key/value pair of a setting in the configuration file.
+
+For example, suppose you want to run `pr_agent` that connects to a self-hosted GitLab instance similar to an example above.
+You can define the environment variables in a plain text file named `.env` with the following content:
+
+```
+CONFIG__GIT_PROVIDER="gitlab"
+GITLAB__URL="<your url>"
+GITLAB__PERSONAL_ACCESS_TOKEN="<your token>"
+OPENAI__KEY="<your key>"
+```
+
+Then, you can run `pr_agent` using Docker with the following command:
+
+```shell
+docker run --rm -it --env-file .env codiumai/pr-agent:latest <tool> <tool parameter>
+```
+
+---
+
+### I get an error when running the Docker image. What should I do?
+
+If you encounter an error when running the Docker image, it is almost always due to a misconfiguration of api keys or tokens.
+
+Note that litellm, which is used by pr-agent, sometimes returns non-informative error messages such as `APIError: OpenAIException - Connection error.`
+Carefully check the api keys and tokens you provided and make sure they are correct.
+Adjustments may be needed depending on your llm provider.
+
+For example, for Azure OpenAI, additional keys are [needed](https://qodo-merge-docs.qodo.ai/usage-guide/changing_a_model/#azure).
+Same goes for other providers, make sure to check the [documentation](https://qodo-merge-docs.qodo.ai/usage-guide/changing_a_model/#changing-a-model)
+
 ## Using pip package

 Install the package:
@ -35,63 +109,6 @@ if __name__ == '__main__':
    main()
 ```

-## Using Docker image
-
-A list of the relevant tools can be found in the [tools guide](../tools/ask.md).
-
-To invoke a tool (for example `review`), you can run directly from the Docker image. Here's how:
-
- For GitHub:
-    ```
-    docker run --rm -it -e OPENAI.KEY=<your key> -e GITHUB.USER_TOKEN=<your token> codiumai/pr-agent:latest --pr_url <pr_url> review
-    ```
-    If you are using GitHub enterprise server, you need to specify the custom url as variable.
-    For example, if your GitHub server is at `https://github.mycompany.com`, add the following to the command:
-    ```
-    -e GITHUB.BASE_URL=https://github.mycompany.com/api/v3
-    ```
-
- For GitLab:
-    ```
-    docker run --rm -it -e OPENAI.KEY=<your key> -e CONFIG.GIT_PROVIDER=gitlab -e GITLAB.PERSONAL_ACCESS_TOKEN=<your token> codiumai/pr-agent:latest --pr_url <pr_url> review
-    ```
-
-    If you have a dedicated GitLab instance, you need to specify the custom url as variable:
-    ```
-    -e GITLAB.URL=<your gitlab instance url>
-    ```
-
- For BitBucket:
-    ```
-    docker run --rm -it -e CONFIG.GIT_PROVIDER=bitbucket -e OPENAI.KEY=$OPENAI_API_KEY -e BITBUCKET.BEARER_TOKEN=$BITBUCKET_BEARER_TOKEN codiumai/pr-agent:latest --pr_url=<pr_url> review
-    ```
-
-For other git providers, update `CONFIG.GIT_PROVIDER` accordingly and check the `pr_agent/settings/.secrets_template.toml` file for environment variables expected names and values.
-The `pr_agent` uses [Dynaconf](https://www.dynaconf.com/) to load settings from configuration files.
-
-It is also possible to provide or override the configuration by setting the corresponding environment variables.
-You can define the corresponding environment variables by following this convention: `<TABLE>__<KEY>=<VALUE>` or `<TABLE>.<KEY>=<VALUE>`.
-The `<TABLE>` refers to a table/section in a configuration file and `<KEY>=<VALUE>` refers to the key/value pair of a setting in the configuration file.
-
-For example, suppose you want to run `pr_agent` that connects to a self-hosted GitLab instance similar to an example above.
-You can define the environment variables in a plain text file named `.env` with the following content:
-
-> Warning: Never commit the `.env` file to version control system as it might contains sensitive credentials!
-
-```
-CONFIG__GIT_PROVIDER="gitlab"
-GITLAB__URL="<your url>"
-GITLAB__PERSONAL_ACCESS_TOKEN="<your token>"
-OPENAI__KEY="<your key>"
-```
-
-Then, you can run `pr_agent` using Docker with the following command:
-
-```shell
-docker run --rm -it --env-file .env codiumai/pr-agent:latest <tool> <tool parameter>
-```
-
---

 ## Run from source

--- a/docs/docs/installation/pr_agent.md
+++ b/docs/docs/installation/pr_agent.md
@ -0,0 +1,49 @@
+# PR-Agent Installation Guide
+
+PR-Agent can be deployed in various environments and platforms. Choose the installation method that best suits your needs:
+
+## 🖥️ Local Installation
+
+Learn how to run PR-Agent locally using:
+
+- Docker image
+- pip package
+- CLI from source code
+
+[View Local Installation Guide →](https://qodo-merge-docs.qodo.ai/installation/locally/)
+
+## 🐙 GitHub Integration
+
+Set up PR-Agent with GitHub as:
+
+- GitHub Action
+- Local GitHub App
+
+[View GitHub Integration Guide →](https://qodo-merge-docs.qodo.ai/installation/github/)
+
+## 🦊 GitLab Integration
+
+Deploy PR-Agent on GitLab as:
+
+- GitLab pipeline job
+- Local GitLab webhook server
+
+[View GitLab Integration Guide →](https://qodo-merge-docs.qodo.ai/installation/gitlab/)
+
+## 🟦 BitBucket Integration
+
+Implement PR-Agent in BitBucket as:
+
+- BitBucket pipeline job
+- Local BitBucket server
+
+[View BitBucket Integration Guide →](https://qodo-merge-docs.qodo.ai/installation/bitbucket/)
+
+## 🔷  Azure DevOps Integration
+
+Configure PR-Agent with Azure DevOps as:
+
+- Azure DevOps pipeline job
+- Local Azure DevOps webhook
+
+[View Azure DevOps Integration Guide →](https://qodo-merge-docs.qodo.ai/installation/azure/)
--- a/docs/docs/installation/pr_agent_pro.md
+++ b/docs/docs/installation/pr_agent_pro.md
@ -1,42 +1,42 @@
-Qodo Merge Pro is a versatile application compatible with GitHub, GitLab, and BitBucket, hosted by QodoAI.
-See [here](https://qodo-merge-docs.qodo.ai/overview/pr_agent_pro/) for more details about the benefits of using Qodo Merge Pro.
+Qodo Merge is a versatile application compatible with GitHub, GitLab, and BitBucket, hosted by QodoAI.
+See [here](https://qodo-merge-docs.qodo.ai/overview/pr_agent_pro/) for more details about the benefits of using Qodo Merge.

 A complimentary two-week trial is provided to all new users. Following the trial period, user licenses (seats) are required for continued access.
 To purchase user licenses, please visit our [pricing page](https://www.qodo.ai/pricing/).
 Once subscribed, users can seamlessly deploy the application across any of their code repositories.

-## Install Qodo Merge Pro for GitHub
+## Install Qodo Merge for GitHub

 ### GitHub Cloud

-Qodo Merge Pro for GitHub cloud is available for installation through the [GitHub Marketplace](https://github.com/apps/qodo-merge-pro).
+Qodo Merge for GitHub cloud is available for installation through the [GitHub Marketplace](https://github.com/apps/qodo-merge-pro).

-![Qodo Merge Pro](https://codium.ai/images/pr_agent/pr_agent_pro_install.png){width=468}
+![Qodo Merge](https://codium.ai/images/pr_agent/pr_agent_pro_install.png){width=468}

 ### GitHub Enterprise Server

-To use Qodo Merge Pro application on your private GitHub Enterprise Server, you will need to contact us for starting an [Enterprise](https://www.codium.ai/pricing/) trial.
+To use Qodo Merge application on your private GitHub Enterprise Server, you will need to contact us for starting an [Enterprise](https://www.codium.ai/pricing/) trial.

 ### GitHub Open Source Projects

-For open-source projects, Qodo Merge Pro is available for free usage. To install Qodo Merge Pro for your open-source repositories, use the following marketplace [link](https://github.com/apps/qodo-merge-pro-for-open-source).
+For open-source projects, Qodo Merge is available for free usage. To install Qodo Merge for your open-source repositories, use the following marketplace [link](https://github.com/apps/qodo-merge-pro-for-open-source).

-## Install Qodo Merge Pro for Bitbucket
+## Install Qodo Merge for Bitbucket

 ###  Bitbucket Cloud

-Qodo Merge Pro for Bitbucket Cloud is available for installation through the following [link](https://bitbucket.org/site/addons/authorize?addon_key=d6df813252c37258)
+Qodo Merge for Bitbucket Cloud is available for installation through the following [link](https://bitbucket.org/site/addons/authorize?addon_key=d6df813252c37258)

-![Qodo Merge Pro](https://qodo.ai/images/pr_agent/pr_agent_pro_bitbucket_install.png){width=468}
+![Qodo Merge](https://qodo.ai/images/pr_agent/pr_agent_pro_bitbucket_install.png){width=468}

 ### Bitbucket Server

-To use Qodo Merge Pro application on your private Bitbucket Server, you will need to contact us for starting an [Enterprise](https://www.codium.ai/pricing/) trial.
+To use Qodo Merge application on your private Bitbucket Server, you will need to contact us for starting an [Enterprise](https://www.qodo.ai/pricing/) trial.


-## Install Qodo Merge Pro for GitLab (Teams & Enterprise)
+## Install Qodo Merge for GitLab (Teams & Enterprise)

-Since GitLab platform does not support apps, installing Qodo Merge Pro for GitLab is a bit more involved, and requires the following steps:
+Since GitLab platform does not support apps, installing Qodo Merge for GitLab is a bit more involved, and requires the following steps:

 #### Step 1

--- a/docs/docs/overview/data_privacy.md
+++ b/docs/docs/overview/data_privacy.md
@ -1,12 +1,12 @@
-## Self-hosted Qodo Merge
+## Self-hosted PR-Agent

- If you self-host Qodo Merge with your OpenAI (or other LLM provider) API key, it is between you and the provider. We don't send your code data to Qodo Merge servers.
+- If you self-host PR-Agent with your OpenAI (or other LLM provider) API key, it is between you and the provider. We don't send your code data to Qodo servers.

-## Qodo Merge Pro 💎
+## Qodo Merge 💎

- When using Qodo Merge Pro 💎, hosted by CodiumAI, we will not store any of your data, nor will we use it for training. You will also benefit from an OpenAI account with zero data retention.
+- When using Qodo Merge💎, hosted by Qodo, we will not store any of your data, nor will we use it for training. You will also benefit from an OpenAI account with zero data retention.

- For certain clients, CodiumAI-hosted Qodo Merge Pro will use CodiumAI’s proprietary models. If this is the case, you will be notified.
+- For certain clients, Qodo Merge will use Qodo’s proprietary models. If this is the case, you will be notified.

 - No passive collection of Code and Pull Requests’ data — Qodo Merge will be active only when you invoke it, and it will then extract and analyze only data relevant to the executed command and queried pull request.

--- a/docs/docs/overview/index.md
+++ b/docs/docs/overview/index.md
@ -1,95 +0,0 @@
-# Overview
-
-Qodo Merge is an open-source tool to help efficiently review and handle pull requests.
-
- See the [Installation Guide](./installation/index.md) for instructions on installing and running the tool on different git platforms.
-
- See the [Usage Guide](./usage-guide/index.md) for instructions on running the Qodo Merge commands via different interfaces, including _CLI_, _online usage_, or by _automatically triggering_ them when a new PR is opened.
-
- See the [Tools Guide](./tools/index.md) for a detailed description of the different tools.
-
-
-## Qodo Merge Docs Smart Search
-
-To search the documentation site using natural language:
-
-1) Comment `/help "your question"` in either:
-
-   - A pull request where Qodo Merge is installed
-   - A [PR Chat](https://qodo-merge-docs.qodo.ai/chrome-extension/features/#pr-chat)
-
-2) Qodo Merge will respond with an [answer](https://github.com/Codium-ai/pr-agent/pull/1241#issuecomment-2365259334) that includes relevant documentation links.
-
-
-## Qodo Merge Features
-
-Qodo Merge offers extensive pull request functionalities across various git providers.
-
-|       |                                                                                                                       | GitHub | Gitlab | Bitbucket | Azure DevOps |
-|-------|-----------------------------------------------------------------------------------------------------------------------|:------:|:------:|:---------:|:------------:|
-| TOOLS | Review                                                                                                                |   ✅    |   ✅    |   ✅       |      ✅      |
-|       | ⮑ Incremental                                                                                                         |   ✅    |        |            |              |
-|       | Ask                                                                                                                   |   ✅    |   ✅    |   ✅        |      ✅      |
-|       | Describe                                                                                                              |   ✅    |   ✅    |   ✅        |      ✅      |
-|       | ⮑ [Inline file summary](https://qodo-merge-docs.qodo.ai/tools/describe/#inline-file-summary){:target="_blank"} 💎     |   ✅    |   ✅    |           |      ✅      |
-|       | Improve                                                                                                               |   ✅    |   ✅    |   ✅        |      ✅      |
-|       | ⮑ Extended                                                                                                            |   ✅    |   ✅    |   ✅        |      ✅      |
-|       | [Custom Prompt](./tools/custom_prompt.md){:target="_blank"} 💎                                                        |   ✅    |   ✅    |   ✅        |      ✅      |
-|       | Reflect and Review                                                                                                    |   ✅    |   ✅    |   ✅        |      ✅      |
-|       | Update CHANGELOG.md                                                                                                   |   ✅    |   ✅    |   ✅        |      ️       |
-|       | Find Similar Issue                                                                                                    |   ✅    |        |             |      ️       |
-|       | [Add PR Documentation](./tools/documentation.md){:target="_blank"} 💎                                                 |   ✅    |   ✅    |          |      ✅      |
-|       | [Generate Custom Labels](./tools/describe.md#handle-custom-labels-from-the-repos-labels-page-💎){:target="_blank"} 💎 |   ✅    |   ✅    |            |      ✅      |
-|       | [Analyze PR Components](./tools/analyze.md){:target="_blank"} 💎                                                      |   ✅    |   ✅    |       |      ✅      |
-|       | [Test](https://pr-agent-docs.codium.ai/tools/test/) 💎                                                                | ✅ |   ✅    |                    |              |
-|       | [Implement](https://pr-agent-docs.codium.ai/tools/implement/) 💎                                                      | ✅ |   ✅    |          ✅         |              |
-|       |                                                                                                                       |        |        |            |      ️       |
-| USAGE | CLI                                                                                                                   |   ✅    |   ✅    |   ✅       |      ✅      |
-|       | App / webhook                                                                                                         |   ✅    |   ✅    |    ✅        |      ✅      |
-|       | Actions                                                                                                               |   ✅    |        |            |      ️       |
-|       |                                                                                                                       |        |        |            |
-| CORE  | PR compression                                                                                                        |   ✅    |   ✅    |   ✅       |   ✅        |
-|       | Repo language prioritization                                                                                          |   ✅    |   ✅    |   ✅       |   ✅        |
-|       | Adaptive and token-aware file patch fitting                                                                           |   ✅    |   ✅    |   ✅     |   ✅        |
-|       | Multiple models support                                                                                               |   ✅    |   ✅    |   ✅       |   ✅        |
-|       | Incremental PR review                                                                                                 |   ✅    |        |            |           |
-|       | [Static code analysis](./tools/analyze.md/){:target="_blank"} 💎                                                      |   ✅    |   ✅    |    ✅    |   ✅        |
-|       | [Multiple configuration options](./usage-guide/configuration_options.md){:target="_blank"} 💎                         |   ✅    |   ✅    |    ✅    |   ✅        |
-
-💎 marks a feature available only in [Qodo Merge Pro](https://www.codium.ai/pricing/){:target="_blank"}
-
-
-## Example Results
-<hr>
-
-#### [/describe](https://github.com/Codium-ai/pr-agent/pull/530)
-<figure markdown="1">
-![/describe](https://www.codium.ai/images/pr_agent/describe_new_short_main.png){width=512}
-</figure>
-<hr>
-
-#### [/review](https://github.com/Codium-ai/pr-agent/pull/732#issuecomment-1975099151)
-<figure markdown="1">
-![/review](https://www.codium.ai/images/pr_agent/review_new_short_main.png){width=512}
-</figure>
-<hr>
-
-#### [/improve](https://github.com/Codium-ai/pr-agent/pull/732#issuecomment-1975099159)
-<figure markdown="1">
-![/improve](https://www.codium.ai/images/pr_agent/improve_new_short_main.png){width=512}
-</figure>
-<hr>
-
-#### [/generate_labels](https://github.com/Codium-ai/pr-agent/pull/530)
-<figure markdown="1">
-![/generate_labels](https://www.codium.ai/images/pr_agent/geneare_custom_labels_main_short.png){width=300}
-</figure>
-<hr>
-
-## How it Works
-
-The following diagram illustrates Qodo Merge tools and their flow:
-
-![Qodo Merge Tools](https://codium.ai/images/pr_agent/diagram-v0.9.png)
-
-Check out the [PR Compression strategy](core-abilities/index.md) page for more details on how we convert a code diff to a manageable LLM prompt
--- a/docs/docs/overview/pr_agent_pro.md
+++ b/docs/docs/overview/pr_agent_pro.md
@ -1,21 +1,21 @@
 ### Overview

-[Qodo Merge Pro](https://www.codium.ai/pricing/){:target="_blank"} is a hosted version of open-source [Qodo Merge (PR-Agent)](https://github.com/Codium-ai/pr-agent){:target="_blank"}. A complimentary two-week trial is offered, followed by a monthly subscription fee.
-Qodo Merge Pro is designed for companies and teams that require additional features and capabilities. It provides the following benefits:
+[Qodo Merge](https://www.codium.ai/pricing/){:target="_blank"} is a hosted version of open-source [PR-Agent](https://github.com/Codium-ai/pr-agent){:target="_blank"}. A complimentary two-week trial is offered, followed by a monthly subscription fee.
+Qodo Merge is designed for companies and teams that require additional features and capabilities. It provides the following benefits:

 1. **Fully managed** - We take care of everything for you - hosting, models, regular updates, and more. Installation is as simple as signing up and adding the Qodo Merge app to your GitHub\GitLab\BitBucket repo.

-2. **Improved privacy** - No data will be stored or used to train models. Qodo Merge Pro will employ zero data retention, and will use an OpenAI and Claude accounts with zero data retention.
+2. **Improved privacy** - No data will be stored or used to train models. Qodo Merge will employ zero data retention, and will use an OpenAI and Claude accounts with zero data retention.

-3. **Improved support** - Qodo Merge Pro users will receive priority support, and will be able to request new features and capabilities.
+3. **Improved support** - Qodo Merge users will receive priority support, and will be able to request new features and capabilities.

-4. **Supporting self-hosted git servers** - Qodo Merge Pro can be installed on GitHub Enterprise Server, GitLab, and BitBucket. For more information, see the [installation guide](https://qodo-merge-docs.qodo.ai/installation/pr_agent_pro/).
+4. **Supporting self-hosted git servers** - Qodo Merge can be installed on GitHub Enterprise Server, GitLab, and BitBucket. For more information, see the [installation guide](https://qodo-merge-docs.qodo.ai/installation/pr_agent_pro/).

-5. **PR Chat** - Qodo Merge Pro allows you to engage in [private chat](https://qodo-merge-docs.qodo.ai/chrome-extension/features/#pr-chat) about your pull requests on private repositories.
+5. **PR Chat** - Qodo Merge allows you to engage in [private chat](https://qodo-merge-docs.qodo.ai/chrome-extension/features/#pr-chat) about your pull requests on private repositories.

 ### Additional features

-Here are some of the additional features and capabilities that Qodo Merge Pro offers:
+Here are some of the additional features and capabilities that Qodo Merge offers:

 | Feature                                                                                                              | Description                                                                                                                                                      |
 |----------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------|
@ -24,14 +24,14 @@ Here are some of the additional features and capabilities that Qodo Merge Pro of
 | [**Apply suggestions**](https://qodo-merge-docs.qodo.ai/tools/improve/#overview)                                     | Generate committable code from the relevant suggestions interactively by clicking on a checkbox                                                                   |
 | [**Suggestions impact**](https://qodo-merge-docs.qodo.ai/tools/improve/#assessing-impact)                         | Automatically mark suggestions that were implemented by the user (either directly in GitHub, or indirectly in the IDE) to enable tracking of the impact of the suggestions |
 | [**CI feedback**](https://qodo-merge-docs.qodo.ai/tools/ci_feedback/) | Automatically analyze failed CI checks on GitHub and provide actionable feedback in the PR conversation, helping to resolve issues quickly |
-| [**Advanced usage statistics**](https://www.codium.ai/contact/#/)                                                    | Qodo Merge Pro offers detailed statistics at user, repository, and company levels, including metrics about Qodo Merge usage, and also general statistics and insights |
+| [**Advanced usage statistics**](https://www.codium.ai/contact/#/)                                                    | Qodo Merge offers detailed statistics at user, repository, and company levels, including metrics about Qodo Merge usage, and also general statistics and insights |
 | [**Incorporating companies' best practices**](https://qodo-merge-docs.qodo.ai/tools/improve/#best-practices)         | Use the companies' best practices as reference to increase the effectiveness and the relevance of the code suggestions                                           |
 | [**Interactive triggering**](https://qodo-merge-docs.qodo.ai/tools/analyze/#example-usage)                           | Interactively apply different tools via the `analyze` command                                                                                                    |
 | [**Custom labels**](https://qodo-merge-docs.qodo.ai/tools/describe/#handle-custom-labels-from-the-repos-labels-page) | Define custom labels for Qodo Merge to assign to the PR                                                                                                           |

 ### Additional tools

-Here are additional tools that are available only for Qodo Merge Pro users:
+Here are additional tools that are available only for Qodo Merge users:

 | Feature                                                                               | Description |
 |---------------------------------------------------------------------------------------|-------------|
@ -46,7 +46,7 @@ Here are additional tools that are available only for Qodo Merge Pro users:

 ### Supported languages

-Qodo Merge Pro leverages the world's leading code models - Claude 3.5 Sonnet and GPT-4.
+Qodo Merge leverages the world's leading code models - Claude 3.5 Sonnet and GPT-4.
 As a result, its primary tools such as `describe`, `review`, and `improve`, as well as the PR-chat feature, support virtually all programming languages.

-For specialized commands that require static code analysis, Qodo Merge Pro offers support for specific languages. For more details about features that require static code analysis, please refer to the [documentation](https://qodo-merge-docs.qodo.ai/tools/analyze/#overview).
+For specialized commands that require static code analysis, Qodo Merge offers support for specific languages. For more details about features that require static code analysis, please refer to the [documentation](https://qodo-merge-docs.qodo.ai/tools/analyze/#overview).
--- a/docs/docs/tools/custom_labels.md
+++ b/docs/docs/tools/custom_labels.md
@ -28,7 +28,7 @@ When working from CLI, you need to apply the [configuration changes](#configurat
 To enable custom labels, you need to apply the [configuration changes](#configuration-options) to the local `.pr_agent.toml` file in your repository.

 #### 3. Handle custom labels from the Repo's labels page 💎
-> This feature is available only in Qodo Merge Pro
+> This feature is available only in Qodo Merge

 * GitHub : `https://github.com/{owner}/{repo}/labels`, or click on the "Labels" tab in the issues or PRs page.
 * GitLab : `https://gitlab.com/{owner}/{repo}/-/labels`, or click on "Manage" -> "Labels" on the left menu.
--- a/docs/docs/tools/help.md
+++ b/docs/docs/tools/help.md
@ -1,6 +1,6 @@
 ## Overview
 The `help` tool provides a list of all the available tools and their descriptions.
-For Qodo Merge Pro users, it also enables to trigger each tool by checking the relevant box.
+For Qodo Merge users, it also enables to trigger each tool by checking the relevant box.

 It can be invoked manually by commenting on any PR:
 ```
--- a/docs/docs/tools/implement.md
+++ b/docs/docs/tools/implement.md
@ -1,3 +1,5 @@
+`Platforms supported: GitHub, GitLab, Bitbucket`
+
 ## Overview

 The `implement` tool converts human code review discussions and feedback into ready-to-commit code changes.
--- a/docs/docs/tools/improve.md
+++ b/docs/docs/tools/improve.md
@ -9,7 +9,7 @@ The tool can be triggered automatically every time a new PR is [opened](../usage

 ![code_suggestions_as_comment_open.png](https://codium.ai/images/pr_agent/code_suggestions_as_comment_open.png){width=512}

-Note that the `Apply this suggestion` checkbox, which interactively converts a suggestion into a commitable code comment, is available only for Qodo Merge Pro 💎 users.
+Note that the `Apply this suggestion` checkbox, which interactively converts a suggestion into a commitable code comment, is available only for Qodo Merge💎 users.


 ## Example usage
@ -54,7 +54,7 @@ num_code_suggestions_per_chunk = ...

 ### Assessing Impact 💎

-Note that Qodo Merge pro tracks two types of implementations:
+Note that Qodo Merge tracks two types of implementations:

 - Direct implementation - when the user directly applies the suggestion by clicking the `Apply` checkbox.
 - Indirect implementation - when the user implements the suggestion in their IDE environment. In this case, Qodo Merge will utilize, after each commit, a dedicated logic to identify if a suggestion was implemented, and will mark it as implemented.
@ -70,7 +70,7 @@ In post-process, Qodo Merge counts the number of suggestions that were implement
 ## Suggestion tracking 💎
 `Platforms supported: GitHub, GitLab`

-Qodo Merge employs an novel detection system to automatically [identify](https://qodo-merge-docs.qodo.ai/core-abilities/impact_evaluation/) AI code suggestions that PR authors have accepted and implemented.
+Qodo Merge employs a novel detection system to automatically [identify](https://qodo-merge-docs.qodo.ai/core-abilities/impact_evaluation/) AI code suggestions that PR authors have accepted and implemented.

 Accepted suggestions are also automatically documented in a dedicated wiki page called `.pr_agent_accepted_suggestions`, allowing users to track historical changes, assess the tool's effectiveness, and learn from previously implemented recommendations in the repository.
 An example [result](https://github.com/Codium-ai/pr-agent/wiki/.pr_agent_accepted_suggestions):
@ -191,8 +191,44 @@ And the label will be: `{organization_name} best practice`.

 ![best_practice](https://codium.ai/images/pr_agent/org_best_practice.png){width=512}

+### Auto best practices 💎

-### How to combine `extra instructions` and `best practices`
+>`Platforms supported: GitHub`
+
+'Auto best practices' is a novel Qodo Merge capability that:
+
+1. Identifies recurring patterns from accepted suggestions
+2. **Automatically** generates [best practices page](https://github.com/qodo-ai/pr-agent/wiki/.pr_agent_auto_best_practices) based on what your team consistently values
+3. Applies these learned patterns to future code reviews
+
+This creates an automatic feedback loop where the system continuously learns from your team's choices to provide increasingly relevant suggestions. 
+The system maintains two analysis phases:
+
+- Open exploration for new issues
+- Targeted checking against established best practices
+
+Note that when a [custom best practices](https://qodo-merge-docs.qodo.ai/tools/improve/#best-practices) exist, Qodo Merge will still generate an 'auto best practices' wiki file, though it won't use it in the `improve` tool.
+Learn more about utilizing 'auto best practices' in our [detailed guide](https://qodo-merge-docs.qodo.ai/core-abilities/auto_best_practices/).
+
+#### Relevant configurations
+
+```toml
+[auto_best_practices]
+# Disable all auto best practices usage or generation
+enable_auto_best_practices = true  
+
+# Disable usage of auto best practices file in the 'improve' tool
+utilize_auto_best_practices = true 
+
+# Extra instructions to the auto best practices generation prompt
+extra_instructions = ""            
+
+# Max number of patterns to be detected
+max_patterns = 5                   
+```
+
+
+### Combining `extra instructions` and `best practices` 💎

 The `extra instructions` configuration is more related to the `improve` tool prompt. It can be used, for example, to avoid specific suggestions ("Don't suggest to add try-except block", "Ignore changes in toml files", ...) or to emphasize specific aspects or formats ("Answer in Japanese", "Give only short suggestions", ...)

--- a/docs/docs/tools/index.md
+++ b/docs/docs/tools/index.md
@ -20,4 +20,4 @@ Here is a list of Qodo Merge tools, each with a dedicated page that explains how
 | **💎 [Improve Component (`/improve_component component_name`](./improve_component.md))** | Generates code suggestions for a specific code component that changed in the PR                                                            |
 | **💎 [CI Feedback (`/checks ci_job`](./ci_feedback.md))**                                | Automatically generates feedback and analysis for a failed CI job                                                                          |
 | **💎 [Implement (`/implement`](./implement.md))**                                        | Generates implementation code from review suggestions                                                                                      |
-Note that the tools marked with 💎 are available only for Qodo Merge Pro users.
+Note that the tools marked with 💎 are available only for Qodo Merge users.
--- a/docs/docs/tools/review.md
+++ b/docs/docs/tools/review.md
@ -123,10 +123,6 @@ If enabled, the `review` tool can approve a PR when a specific comment, `/review
    <td><b>enable_auto_approval</b></td>
    <td>If set to true, the tool will approve the PR when invoked with the 'auto_approve' command. Default is false. This flag can be changed only from a configuration file.</td>
  </tr>
-  <tr>
-    <td><b>maximal_review_effort</b></td>
-    <td>Maximal effort level for auto-approval. If the PR's estimated review effort is above this threshold, the auto-approval will not run. Default is 5.</td>
-  </tr>
 </table>

 ## Usage Tips
@ -198,12 +194,6 @@ If enabled, the `review` tool can approve a PR when a specific comment, `/review
    Qodo Merge will automatically approve the PR, and add a comment with the approval.


-    You can also enable auto-approval only if the PR meets certain requirements, such as that the `estimated_review_effort` label is equal or below a certain threshold, by adjusting the flag:
-    ```
-    [pr_reviewer]
-    maximal_review_effort = 5
-    ```
-
 !!! tip  "Code suggestions"

    The `review` tool previously included a legacy feature for providing code suggestions (controlled by `--pr_reviewer.num_code_suggestion`). This functionality has been deprecated and replaced by the [`improve`](./improve.md) tool, which offers higher quality and more actionable code suggestions.
--- a/docs/docs/usage-guide/PR_agent_pro_models.md
+++ b/docs/docs/usage-guide/PR_agent_pro_models.md
@ -1,18 +1,38 @@
-## Qodo Merge Pro Models
+## Qodo Merge Models

-The default models used by Qodo Merge Pro are a combination of Claude-3.5-sonnet and  OpenAI's GPT-4 models.
+The default models used by Qodo Merge are a combination of Claude-3.5-sonnet and  OpenAI's GPT-4 models.

-Users can configure Qodo Merge Pro to use solely a specific model by editing the [configuration](https://qodo-merge-docs.qodo.ai/usage-guide/configuration_options/) file.
+### Selecting a Specific Model

-For example, to restrict Qodo Merge Pro to using only `Claude-3.5-sonnet`, add this setting:
+Users can configure Qodo Merge to use a specific model by editing the [configuration](https://qodo-merge-docs.qodo.ai/usage-guide/configuration_options/) file.
+The models supported by Qodo Merge are:
+
+- `claude-3-5-sonnet`
+- `gpt-4o`
+- `deepseek-r1`
+- `o3-mini`
+
+To restrict Qodo Merge to using only `Claude-3.5-sonnet`, add this setting:

 ```
 [config]
 model="claude-3-5-sonnet"
 ```

-Or to restrict Qodo Merge Pro to using only `GPT-4o`, add this setting:
+To restrict Qodo Merge to using only `GPT-4o`, add this setting:
 ```
 [config]
 model="gpt-4o"
 ```
+
+To restrict Qodo Merge to using only `deepseek-r1`, add this setting:
+```
+[config]
+model="deepseek/r1"
+```
+
+To restrict Qodo Merge to using only `o3-mini`, add this setting:
+```
+[config]
+model="o3-mini"
+```
--- a/docs/docs/usage-guide/automations_and_usage.md
+++ b/docs/docs/usage-guide/automations_and_usage.md
@ -95,8 +95,8 @@ When this parameter is set to `true`, Qodo Merge will not run any automatic tool

 ### GitHub App

-!!! note "Configurations for Qodo Merge Pro"
-    Qodo Merge Pro for GitHub is an App, hosted by CodiumAI. So all the instructions below are relevant also for Qodo Merge Pro users.
+!!! note "Configurations for Qodo Merge"
+    Qodo Merge for GitHub is an App, hosted by Qodo. So all the instructions below are relevant also for Qodo Merge users.
    Same goes for [GitLab webhook](#gitlab-webhook) and [BitBucket App](#bitbucket-app) sections.

 #### GitHub app automatic tools when a new PR is opened
--- a/docs/docs/usage-guide/changing_a_model.md
+++ b/docs/docs/usage-guide/changing_a_model.md
@ -1,4 +1,4 @@
-## Changing a model
+## Changing a model in PR-Agent

 See [here](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/algo/__init__.py) for a list of available models.
 To use a different model than the default (GPT-4), you need to edit in the [configuration file](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/settings/configuration.toml#L2) the fields:
--- a/docs/docs/usage-guide/configuration_options.md
+++ b/docs/docs/usage-guide/configuration_options.md
@ -20,7 +20,7 @@ In terms of precedence, wiki configurations will override local configurations,

 `Platforms supported: GitHub, GitLab, Bitbucket`

-With Qodo Merge Pro, you can set configurations by creating a page called `.pr_agent.toml` in the [wiki](https://github.com/Codium-ai/pr-agent/wiki/pr_agent.toml) of the repo.
+With Qodo Merge, you can set configurations by creating a page called `.pr_agent.toml` in the [wiki](https://github.com/Codium-ai/pr-agent/wiki/pr_agent.toml) of the repo.
 The advantage of this method is that it allows to set configurations without needing to commit new content to the repo - just edit the wiki page and **save**.


--- a/docs/docs/usage-guide/enabling_a_wiki.md
+++ b/docs/docs/usage-guide/enabling_a_wiki.md
@ -3,12 +3,12 @@

 For optimal functionality of Qodo Merge, we recommend enabling a wiki for each repository where Qodo Merge is installed. The wiki serves several important purposes:

-**Key Wiki Features:**
+**Key Wiki Features: 💎**

 - Storing a [configuration file](https://qodo-merge-docs.qodo.ai/usage-guide/configuration_options/#wiki-configuration-file)
 - Defining a [`best_practices.md`](https://qodo-merge-docs.qodo.ai/tools/improve/#best-practices) file
 - Track [accepted suggestions](https://qodo-merge-docs.qodo.ai/tools/improve/#suggestion-tracking)
- Facilitates learning over time by creating an [auto_best_practices.md]() file
+- Facilitates learning over time by creating an [auto_best_practices.md](https://qodo-merge-docs.qodo.ai/core-abilities/auto_best_practices) file


 **Setup Instructions (GitHub):**
@ -21,4 +21,13 @@ To enable a wiki for your repository:
 4. Enable the "Wikis" option by checking the corresponding box
 5. Return to your repository's main page
 6. Look for the newly added "Wiki" tab in the top navigation
-7. Initialize your wiki by clicking "Create the first page" (this step is important - without creating an initial page, the wiki will not be fully functional)
+7. Initialize your wiki by clicking "Create the first page" and saving (this step is important - without creating an initial page, the wiki will not be fully functional)
+
+### Why Wiki?
+
+- Your code (and its derivatives, including accepted code suggestions) is yours. Qodo Merge will never store it on external servers.
+- Repository changes typically require pull requests, which create overhead and are time-consuming. This process is too cumbersome for auto data aggregation, and is not very convenient even for managing frequently updated content like configuration files and best practices.
+- A repository wiki page provides an ideal balance:
+    - It lives within your repository, making it suitable for code-related documentation
+    - It enables quick updates without the overhead of pull requests
+    - It maintains full Git version control, allowing you to track changes over time.
--- a/docs/docs/usage-guide/index.md
+++ b/docs/docs/usage-guide/index.md
@ -24,4 +24,4 @@ It includes information on how to adjust Qodo Merge configurations, define which
    - [Changing a model](./additional_configurations.md#changing-a-model)
    - [Patch Extra Lines](./additional_configurations.md#patch-extra-lines)
    - [Editing the prompts](./additional_configurations.md#editing-the-prompts)
- [Qodo Merge Pro Models](./PR_agent_pro_models.md)
+- [Qodo Merge Models](./PR_agent_pro_models.md)
--- a/docs/mkdocs.yml
+++ b/docs/mkdocs.yml
@ -1,20 +1,16 @@
-site_name: Qodo Merge (formerly known as PR-Agent)
+site_name: Qodo Merge (and open-source PR-Agent)
 repo_url: https://github.com/Codium-ai/pr-agent
 repo_name: Codium-ai/pr-agent

 nav:
  - Overview:
    - 'index.md'
-    - 💎 Qodo Merge Pro: 'overview/pr_agent_pro.md'
+    - 💎 Qodo Merge: 'overview/pr_agent_pro.md'
    - Data Privacy: 'overview/data_privacy.md'
  - Installation:
    - 'installation/index.md'
-    - Locally: 'installation/locally.md'
-    - GitHub: 'installation/github.md'
-    - GitLab: 'installation/gitlab.md'
-    - BitBucket: 'installation/bitbucket.md'
-    - Azure DevOps: 'installation/azure.md'
-    - 💎 Qodo Merge Pro: 'installation/pr_agent_pro.md'
+    - PR-Agent: 'installation/pr_agent.md'
+    - 💎 Qodo Merge: 'installation/qodo_merge.md'
  - Usage Guide:
    - 'usage-guide/index.md'
    - Introduction: 'usage-guide/introduction.md'
@ -24,7 +20,7 @@ nav:
    - Managing Mail Notifications: 'usage-guide/mail_notifications.md'
    - Changing a Model: 'usage-guide/changing_a_model.md'
    - Additional Configurations: 'usage-guide/additional_configurations.md'
-    - 💎 Qodo Merge Pro Models: 'usage-guide/PR_agent_pro_models'
+    - 💎 Qodo Merge Models: 'usage-guide/PR_agent_pro_models'
  - Tools:
    - 'tools/index.md'
    - Describe: 'tools/describe.md'
@ -46,6 +42,7 @@ nav:
  - Core Abilities:
      - 'core-abilities/index.md'
      - Fetching ticket context: 'core-abilities/fetching_ticket_context.md'
+      - Auto best practices: 'core-abilities/auto_best_practices.md'
      - Local and global metadata: 'core-abilities/metadata.md'
      - Dynamic context: 'core-abilities/dynamic_context.md'
      - Self-reflection: 'core-abilities/self_reflection.md'
--- a/pr_agent/algo/init.py
+++ b/pr_agent/algo/init.py
@ -26,10 +26,13 @@ MAX_TOKENS = {
    'o1-preview-2024-09-12': 128000,  # 128K, but may be limited by config.max_model_tokens
    'o1-2024-12-17': 204800,  # 200K, but may be limited by config.max_model_tokens
    'o1': 204800,  # 200K, but may be limited by config.max_model_tokens
+    'o3-mini': 204800,  # 200K, but may be limited by config.max_model_tokens
+    'o3-mini-2025-01-31': 204800,  # 200K, but may be limited by config.max_model_tokens
    'claude-instant-1': 100000,
    'claude-2': 100000,
    'command-nightly': 4096,
    'deepseek/deepseek-chat': 128000,  # 128K, but may be limited by config.max_model_tokens
+    'deepseek/deepseek-reasoner': 64000,  # 64K, but may be limited by config.max_model_tokens
    'replicate/llama-2-70b-chat:2c1608e18606fad2812020dc541930f2d0495ce32eee50074220b87300bc16e1': 4096,
    'meta-llama/Llama-2-7b-chat-hf': 4096,
    'vertex_ai/codechat-bison': 6144,
@ -80,3 +83,13 @@ MAX_TOKENS = {
    "watsonx/ibm/granite-34b-code-instruct": 8191,
    "watsonx/mistralai/mistral-large": 32768,
 }
+
+USER_MESSAGE_ONLY_MODELS = [
+    "deepseek/deepseek-reasoner",
+    "o1-mini",
+    "o1-mini-2024-09-12",
+    "o1",
+    "o1-2024-12-17",
+    "o3-mini",
+    "o3-mini-2025-01-31"
+]
--- a/pr_agent/algo/ai_handlers/litellm_ai_handler.py
+++ b/pr_agent/algo/ai_handlers/litellm_ai_handler.py
@ -6,6 +6,7 @@ import requests
 from litellm import acompletion
 from tenacity import retry, retry_if_exception_type, stop_after_attempt

+from pr_agent.algo import USER_MESSAGE_ONLY_MODELS
 from pr_agent.algo.ai_handlers.base_ai_handler import BaseAiHandler
 from pr_agent.algo.utils import get_version
 from pr_agent.config_loader import get_settings
@ -94,6 +95,9 @@ class LiteLLMAIHandler(BaseAiHandler):
        if get_settings().get("DEEPSEEK.KEY", None):
            os.environ['DEEPSEEK_API_KEY'] = get_settings().get("DEEPSEEK.KEY")

+        # Models that only use user meessage
+        self.user_message_only_models = USER_MESSAGE_ONLY_MODELS
+
    def prepare_logs(self, response, system, user, resp, finish_reason):
        response_log = response.dict().copy()
        response_log['system'] = system
@ -197,13 +201,11 @@ class LiteLLMAIHandler(BaseAiHandler):
                messages[1]["content"] = [{"type": "text", "text": messages[1]["content"]},
                                          {"type": "image_url", "image_url": {"url": img_path}}]

-            # Currently, model OpenAI o1 series does not support a separate system and user prompts
-            O1_MODEL_PREFIX = 'o1'
-            model_type = model.split('/')[-1] if '/' in model else model
-            if model_type.startswith(O1_MODEL_PREFIX):
+            # Currently, some models do not support a separate system and user prompts
+            if self.user_message_only_models and any(entry.lower() in model.lower() for entry in self.user_message_only_models):
                user = f"{system}\n\n\n{user}"
                system = ""
-                get_logger().info(f"Using O1 model, combining system and user prompts")
+                get_logger().info(f"Using model {model}, combining system and user prompts")
                messages = [{"role": "user", "content": user}]
                kwargs = {
                    "model": model,
--- a/pr_agent/algo/utils.py
+++ b/pr_agent/algo/utils.py
@ -316,47 +316,98 @@ def extract_relevant_lines_str(end_line, files, relevant_file, start_line, deden

 def ticket_markdown_logic(emoji, markdown_text, value, gfm_supported) -> str:
    ticket_compliance_str = ""
-    final_compliance_level = -1
+    compliance_emoji = ''
+    # Track compliance levels across all tickets
+    all_compliance_levels = []
+
    if isinstance(value, list):
-        for v in value:
-            ticket_url = v.get('ticket_url', '').strip()
-            compliance_level = v.get('overall_compliance_level', '').strip()
-            # add emojis, if 'Fully compliant' ✅, 'Partially compliant' 🔶, or 'Not compliant' ❌
-            if compliance_level.lower() == 'fully compliant':
-                # compliance_level = '✅ Fully compliant'
-                final_compliance_level = 2 if final_compliance_level == -1 else 1
-            elif compliance_level.lower() == 'partially compliant':
-                # compliance_level = '🔶 Partially compliant'
-                final_compliance_level = 1
-            elif compliance_level.lower() == 'not compliant':
-                # compliance_level = '❌ Not compliant'
-                final_compliance_level = 0 if final_compliance_level < 1 else 1
-
-            # explanation = v.get('compliance_analysis', '').strip()
+        for ticket_analysis in value:
+            try:
+                ticket_url = ticket_analysis.get('ticket_url', '').strip()
                explanation = ''
-            fully_compliant_str = v.get('fully_compliant_requirements', '').strip()
-            not_compliant_str = v.get('not_compliant_requirements', '').strip()
+                ticket_compliance_level = ''  # Individual ticket compliance
+                fully_compliant_str = ticket_analysis.get('fully_compliant_requirements', '').strip()
+                not_compliant_str = ticket_analysis.get('not_compliant_requirements', '').strip()
+                requires_further_human_verification = ticket_analysis.get('requires_further_human_verification',
+                                                                          '').strip()
+
+                if not fully_compliant_str and not not_compliant_str:
+                    get_logger().debug(f"Ticket compliance has no requirements",
+                                       artifact={'ticket_url': ticket_url})
+                    continue
+
+                # Calculate individual ticket compliance level
                if fully_compliant_str:
-                explanation += f"Fully compliant requirements:\n{fully_compliant_str}\n\n"
                    if not_compliant_str:
-                explanation += f"Not compliant requirements:\n{not_compliant_str}\n\n"
-
-            ticket_compliance_str += f"\n\n**[{ticket_url.split('/')[-1]}]({ticket_url}) - {compliance_level}**\n\n{explanation}\n\n"
-        if final_compliance_level == 2:
-            compliance_level = '✅'
-        elif final_compliance_level == 1:
-            compliance_level = '🔶'
+                        ticket_compliance_level = 'Partially compliant'
                    else:
-            compliance_level = '❌'
+                        if not requires_further_human_verification:
+                            ticket_compliance_level = 'Fully compliant'
+                        else:
+                            ticket_compliance_level = 'PR Code Verified'
+                elif not_compliant_str:
+                    ticket_compliance_level = 'Not compliant'

+                # Store the compliance level for aggregation
+                if ticket_compliance_level:
+                    all_compliance_levels.append(ticket_compliance_level)
+
+                # build compliance string
+                if fully_compliant_str:
+                    explanation += f"Compliant requirements:\n\n{fully_compliant_str}\n\n"
+                if not_compliant_str:
+                    explanation += f"Non-compliant requirements:\n\n{not_compliant_str}\n\n"
+                if requires_further_human_verification:
+                    explanation += f"Requires further human verification:\n\n{requires_further_human_verification}\n\n"
+                ticket_compliance_str += f"\n\n**[{ticket_url.split('/')[-1]}]({ticket_url}) - {ticket_compliance_level}**\n\n{explanation}\n\n"
+
+                # for debugging
+                if requires_further_human_verification:
+                    get_logger().debug(f"Ticket compliance requires further human verification",
+                                       artifact={'ticket_url': ticket_url,
+                                                 'requires_further_human_verification': requires_further_human_verification,
+                                                 'compliance_level': ticket_compliance_level})
+
+            except Exception as e:
+                get_logger().exception(f"Failed to process ticket compliance: {e}")
+                continue
+
+        # Calculate overall compliance level and emoji
+        if all_compliance_levels:
+            if all(level == 'Fully compliant' for level in all_compliance_levels):
+                compliance_level = 'Fully compliant'
+                compliance_emoji = '✅'
+            elif all(level == 'PR Code Verified' for level in all_compliance_levels):
+                compliance_level = 'PR Code Verified'
+                compliance_emoji = '✅'
+            elif any(level == 'Not compliant' for level in all_compliance_levels):
+                # If there's a mix of compliant and non-compliant tickets
+                if any(level in ['Fully compliant', 'PR Code Verified'] for level in all_compliance_levels):
+                    compliance_level = 'Partially compliant'
+                    compliance_emoji = '🔶'
+                else:
+                    compliance_level = 'Not compliant'
+                    compliance_emoji = '❌'
+            elif any(level == 'Partially compliant' for level in all_compliance_levels):
+                compliance_level = 'Partially compliant'
+                compliance_emoji = '🔶'
+            else:
+                compliance_level = 'PR Code Verified'
+                compliance_emoji = '✅'
+
+            # Set extra statistics outside the ticket loop
+            get_settings().set('config.extra_statistics', {'compliance_level': compliance_level})
+
+        # editing table row for ticket compliance analysis
        if gfm_supported:
            markdown_text += f"<tr><td>\n\n"
-            markdown_text += f"**{emoji} Ticket compliance analysis {compliance_level}**\n\n"
+            markdown_text += f"**{emoji} Ticket compliance analysis {compliance_emoji}**\n\n"
            markdown_text += ticket_compliance_str
            markdown_text += f"</td></tr>\n"
        else:
-            markdown_text += f"### {emoji} Ticket compliance analysis {compliance_level}\n\n"
-            markdown_text += ticket_compliance_str+"\n\n"
+            markdown_text += f"### {emoji} Ticket compliance analysis {compliance_emoji}\n\n"
+            markdown_text += ticket_compliance_str + "\n\n"
+
    return markdown_text


@ -684,7 +735,7 @@ def try_fix_yaml(response_text: str,
        get_logger().info(f"Successfully parsed AI prediction after adding |-\n")
        return data
    except:
-        get_logger().info(f"Failed to parse AI prediction after adding |-\n")
+        pass

    # second fallback - try to extract only range from first ```yaml to ````
    snippet_pattern = r'```(yaml)?[\s\S]*?```'
@ -728,9 +779,18 @@ def try_fix_yaml(response_text: str,
        except:
            pass

+    # fifth fallback - try to remove leading '+' (sometimes added by AI for 'existing code' and 'improved code')
+    response_text_lines_copy = response_text_lines.copy()
+    for i in range(0, len(response_text_lines_copy)):
+        response_text_lines_copy[i] = ' ' + response_text_lines_copy[i][1:]
+    try:
+        data = yaml.safe_load('\n'.join(response_text_lines_copy))
+        get_logger().info(f"Successfully parsed AI prediction after removing leading '+'")
+        return data
+    except:
+        pass

-    # fifth fallback - try to remove last lines
-    data = {}
+    # sixth fallback - try to remove last lines
    for i in range(1, len(response_text_lines)):
        response_text_lines_tmp = '\n'.join(response_text_lines[:-i])
        try:
--- a/pr_agent/cli.py
+++ b/pr_agent/cli.py
@ -77,8 +77,6 @@ def run(inargs=None, args=None):
    async def inner():
        if args.issue_url:
            result = await asyncio.create_task(PRAgent().handle_request(args.issue_url, [command] + args.rest))
-        elif args.repo_url:
-            result = await asyncio.create_task(PRAgent().handle_request(args.repo_url, [command] + args.rest))
        else:
            result = await asyncio.create_task(PRAgent().handle_request(args.pr_url, [command] + args.rest))

--- a/pr_agent/git_providers/bitbucket_server_provider.py
+++ b/pr_agent/git_providers/bitbucket_server_provider.py
@ -234,7 +234,7 @@ class BitbucketServerProvider(GitProvider):
                    new_file_content_str = self.get_file(file_path, head_sha)
                    new_file_content_str = decode_if_bytes(new_file_content_str)

-            patch = load_large_diff(file_path, new_file_content_str, original_file_content_str)
+            patch = load_large_diff(file_path, new_file_content_str, original_file_content_str, show_warning=False)

            diff_files.append(
                FilePatchInfo(
--- a/pr_agent/git_providers/github_provider.py
+++ b/pr_agent/git_providers/github_provider.py
@ -9,7 +9,7 @@ from datetime import datetime
 from typing import Optional, Tuple
 from urllib.parse import urlparse

-from github import AppAuthentication, Auth, Github
+from github import AppAuthentication, Auth, Github, GithubException
 from retry import retry
 from starlette_context import context

@ -475,8 +475,17 @@ class GithubProvider(GitProvider):
            return False

    def edit_comment(self, comment, body: str):
+        try:
            body = self.limit_output_characters(body, self.max_comment_chars)
            comment.edit(body=body)
+        except GithubException as e:
+            if hasattr(e, "status") and e.status == 403:
+                # Log as warning for permission-related issues (usually due to polling)
+                get_logger().warning(
+                    "Failed to edit github comment due to permission restrictions",
+                    artifact={"error": e})
+            else:
+                get_logger().exception(f"Failed to edit github comment", artifact={"error": e})

    def edit_comment_from_comment_id(self, comment_id: int, body: str):
        try:
--- a/pr_agent/servers/github_polling.py
+++ b/pr_agent/servers/github_polling.py
@ -130,12 +130,14 @@ async def is_valid_notification(notification, headers, handled_ids, session, use
                                                      artifact={"comment": comment_body})
                                    return True, handled_ids, comment, comment_body, pr_url, user_tag

-                            get_logger().error(f"Failed to fetch comments for PR: {pr_url}")
+                            get_logger().warning(f"Failed to fetch comments for PR: {pr_url}",
+                                                    artifact={"comments": comments})
                            return False, handled_ids

        return False, handled_ids
    except Exception as e:
-        get_logger().error(f"Error processing notification: {e}", artifact={"traceback": traceback.format_exc()})
+        get_logger().exception(f"Error processing polling notification",
+                               artifact={"notification": notification, "error": e})
        return False, handled_ids


--- a/pr_agent/settings/configuration.toml
+++ b/pr_agent/settings/configuration.toml
@ -71,7 +71,6 @@ enable_intro_text=true
 enable_help_text=false # Determines whether to include help text in the PR review. Enabled by default.
 # auto approval
 enable_auto_approval=false
-maximal_review_effort=5


 [pr_description] # /describe #
@ -122,6 +121,9 @@ max_history_len=4
 apply_suggestions_checkbox=true
 # suggestions scoring
 suggestions_score_threshold=0 # [0-10]| recommend not to set this value above 8, since above it may clip highly relevant suggestions
+new_score_mechanism=true
+new_score_mechanism_th_high=9
+new_score_mechanism_th_medium=7
 # params for '/improve --extended' mode
 auto_extended_mode=true
 num_code_suggestions_per_chunk=4
@ -308,7 +310,16 @@ number_of_results = 5

 [lancedb]
 uri = "./lancedb"
+
 [best_practices]
 content = ""
+organization_name = ""
 max_lines_allowed = 800
 enable_global_best_practices = false
+
+[auto_best_practices]
+enable_auto_best_practices = true # public - general flag to disable all auto best practices usage
+utilize_auto_best_practices = true # public - disable usage of auto best practices in the 'improve' tool
+extra_instructions = "" # public - extra instructions to the auto best practices generation prompt
+content = ""
+max_patterns = 5 # max number of patterns to be detected
--- a/pr_agent/settings/pr_code_suggestions_prompts.toml
+++ b/pr_agent/settings/pr_code_suggestions_prompts.toml
@ -30,7 +30,7 @@ __old hunk__
@@ ... @@ def func2():
 __new hunk__
 unchanged code line4
-+new code line5 removed
+new code line5 added
 unchanged code line6

 ## File: 'src/file2.py'
@ -66,7 +66,7 @@ Specific guidelines for generating code suggestions:
 - Do not suggest to change packages version, add missing import statement, or declare undefined variable.
 {%- endif %}
 - When mentioning code elements (variables, names, or files) in your response, surround them with backticks (`). For example: "verify that `user_id` is..."
- Note that you only see changed code segments (diff hunks in a PR), not the entire codebase. Avoid suggestions that might duplicate existing functionality or questioning code elements (like variables declerations or import statements) that may be defined elsewhere in the codebase.
+- Note that you only see changed code segments (diff hunks in a PR), not the entire codebase. Avoid suggestions that might duplicate existing functionality or questioning code elements (like variables declarations or import statements) that may be defined elsewhere in the codebase.

 {%- if extra_instructions %}

@ -84,13 +84,13 @@ class CodeSuggestion(BaseModel):
    relevant_file: str = Field(description="Full path of the relevant file")
    language: str = Field(description="Programming language used by the relevant file")
    suggestion_content: str = Field(description="An actionable suggestion to enhance, improve or fix the new code introduced in the PR. Don't present here actual code snippets, just the suggestion. Be short and concise")
-    existing_code: str = Field(description="A short code snippet from a '__new hunk__' section that the suggestion aims to enhance or fix. Include only complete code lines. Use ellipsis (...) for brevity if needed. This snippet should represent the specific PR code targeted for improvement.")
+    existing_code: str = Field(description="A short code snippet, from a '__new hunk__' section after the PR changes, that the suggestion aims to enhance or fix. Include only complete code lines. Use ellipsis (...) for brevity if needed. This snippet should represent the specific PR code targeted for improvement.")
    improved_code: str = Field(description="A refined code snippet that replaces the 'existing_code' snippet after implementing the suggestion.")
    one_sentence_summary: str = Field(description="A concise, single-sentence overview (up to 6 words) of the suggested improvement. Focus on the 'what'. Be general, and avoid method or variable names.")
 {%- if not focus_only_on_problems %}
    label: str = Field(description="A single, descriptive label that best characterizes the suggestion type. Possible labels include 'security', 'possible bug', 'possible issue', 'performance', 'enhancement', 'best practice', 'maintainability', 'typo'. Other relevant labels are also acceptable.")
 {%- else %}
-    label: str = Field(description="A single, descriptive label that best characterizes the suggestion type. Possible labels include 'security', 'critical bug', 'general'. The 'general' section should be used for suggestions that address a major issue, but are necessarily on a critical level.")
+    label: str = Field(description="A single, descriptive label that best characterizes the suggestion type. Possible labels include 'security', 'critical bug', 'general'. The 'general' section should be used for suggestions that address a major issue, but are not necessarily on a critical level.")
 {%- endif %}


--- a/pr_agent/settings/pr_reviewer_prompts.toml
+++ b/pr_agent/settings/pr_reviewer_prompts.toml
@ -75,10 +75,10 @@ class KeyIssuesComponentLink(BaseModel):

 class TicketCompliance(BaseModel):
    ticket_url: str = Field(description="Ticket URL or ID")
-    ticket_requirements: str = Field(description="Repeat, in your own words, all ticket requirements, in bullet points")
-    fully_compliant_requirements: str = Field(description="A list, in bullet points, of which requirements are met by the PR code. Don't explain how the requirements are met, just list them shortly. Can be empty")
-    not_compliant_requirements: str = Field(description="A list, in bullet points, of which requirements are not met by the PR code. Don't explain how the requirements are not met, just list them shortly. Can be empty")
-    overall_compliance_level: str = Field(description="Overall give this PR one of these three values in relation to the ticket: 'Fully compliant', 'Partially compliant', or 'Not compliant'")
+    ticket_requirements: str = Field(description="Repeat, in your own words (in bullet points), all the requirements, sub-tasks, DoD, and acceptance criteria raised by the ticket")
+    fully_compliant_requirements: str = Field(description="Bullet-point list of items from the  'ticket_requirements' section above that are fulfilled by the PR code. Don't explain how the requirements are met, just list them shortly. Can be empty")
+    not_compliant_requirements: str = Field(description="Bullet-point list of items from the 'ticket_requirements' section above that are not fulfilled by the PR code. Don't explain how the requirements are not met, just list them shortly. Can be empty")
+    requires_further_human_verification: str = Field(description="Bullet-point list of items from the 'ticket_requirements' section above that cannot be assessed through code review alone, are unclear, or need further human review (e.g., browser testing, UI checks). Leave empty if all 'ticket_requirements' were marked as fully compliant or not compliant")
 {%- endif %}

 class Review(BaseModel):
--- a/pr_agent/tools/pr_code_suggestions.py
+++ b/pr_agent/tools/pr_code_suggestions.py
@ -720,7 +720,7 @@ class PRCodeSuggestions:
            header = f"Suggestion"
            delta = 66
            header += "&nbsp; " * delta
-            pr_body += f"""<thead><tr><td>Category</td><td align=left>{header}</td><td align=center>Score</td></tr>"""
+            pr_body += f"""<thead><tr><td><strong>Category</strong></td><td align=left><strong>{header}</strong></td><td align=center><strong>Impact</strong></td></tr>"""
            pr_body += """<tbody>"""
            suggestions_labels = dict()
            # add all suggestions related to each label
@ -740,7 +740,7 @@ class PRCodeSuggestions:
            counter_suggestions = 0
            for label, suggestions in suggestions_labels.items():
                num_suggestions = len(suggestions)
-                pr_body += f"""<tr><td rowspan={num_suggestions}><strong>{label.capitalize()}</strong></td>\n"""
+                pr_body += f"""<tr><td rowspan={num_suggestions}>{label.capitalize()}</td>\n"""
                for i, suggestion in enumerate(suggestions):

                    relevant_file = suggestion['relevant_file'].strip()
@ -794,14 +794,19 @@ class PRCodeSuggestions:

 {example_code.rstrip()}
 """
+                    if suggestion.get('score_why'):
                        pr_body += f"<details><summary>Suggestion importance[1-10]: {suggestion['score']}</summary>\n\n"
-                    pr_body += f"Why: {suggestion['score_why']}\n\n"
+                        pr_body += f"__\n\nWhy: {suggestion['score_why']}\n\n"
                        pr_body += f"</details>"

                    pr_body += f"</details>"

                    # # add another column for 'score'
-                    pr_body += f"</td><td align=center>{suggestion['score']}\n\n"
+                    score_int = int(suggestion.get('score', 0))
+                    score_str = f"{score_int}"
+                    if get_settings().pr_code_suggestions.new_score_mechanism:
+                        score_str = self.get_score_str(score_int)
+                    pr_body += f"</td><td align=center>{score_str}\n\n"

                    pr_body += f"</td></tr>"
                    counter_suggestions += 1
@ -814,6 +819,16 @@ class PRCodeSuggestions:
            get_logger().info(f"Failed to publish summarized code suggestions, error: {e}")
            return ""

+    def get_score_str(self, score: int) -> str:
+        th_high = get_settings().pr_code_suggestions.get('new_score_mechanism_th_high', 9)
+        th_medium = get_settings().pr_code_suggestions.get('new_score_mechanism_th_medium', 7)
+        if score >= th_high:
+            return "High"
+        elif score >= th_medium:
+            return "Medium"
+        else:  # score < 7
+            return "Low"
+
    async def self_reflect_on_suggestions(self,
                                          suggestion_list: List,
                                          patches_diff: str,
--- a/pr_agent/tools/pr_description.py
+++ b/pr_agent/tools/pr_description.py
@ -134,8 +134,18 @@ class PRDescription:
                pr_body += "<hr>\n\n<details> <summary><strong>✨ Describe tool usage guide:</strong></summary><hr> \n\n"
                pr_body += HelpMessage.get_describe_usage_guide()
                pr_body += "\n</details>\n"
-            elif get_settings().pr_description.enable_help_comment:
-                pr_body += '\n\n___\n\n> 💡 **PR-Agent usage**: Comment `/help "your question"` on any pull request to receive relevant information'
+            elif get_settings().pr_description.enable_help_comment and self.git_provider.is_supported("gfm_markdown"):
+                if isinstance(self.git_provider, GithubProvider):
+                    pr_body += ('\n\n___\n\n> <details> <summary>  Need help?</summary><li>Type <code>/help how to ...</code> '
+                                'in the comments thread for any questions about PR-Agent usage.</li><li>Check out the '
+                                '<a href="https://qodo-merge-docs.qodo.ai/usage-guide/">documentation</a> '
+                                'for more information.</li></details>')
+                else: # gitlab
+                    pr_body += ("\n\n___\n\n<details><summary>Need help?</summary>- Type <code>/help how to ...</code> in the comments "
+                                "thread for any questions about PR-Agent usage.<br>- Check out the "
+                                "<a href='https://qodo-merge-docs.qodo.ai/usage-guide/'>documentation</a> for more information.</details>")
+            # elif get_settings().pr_description.enable_help_comment:
+            #     pr_body += '\n\n___\n\n> 💡 **PR-Agent usage**: Comment `/help "your question"` on any pull request to receive relevant information'

            # Output the relevant configurations if enabled
            if get_settings().get('config', {}).get('output_relevant_configurations', False):
--- a/pr_agent/tools/pr_help_message.py
+++ b/pr_agent/tools/pr_help_message.py
@ -174,10 +174,11 @@ class PRHelpMessage:
                tool_names.append(f"[IMPROVE COMPONENT]({base_path}/improve_component/) 💎")
                tool_names.append(f"[ANALYZE]({base_path}/analyze/) 💎")
                tool_names.append(f"[ASK]({base_path}/ask/)")
+                tool_names.append(f"[SIMILAR ISSUE]({base_path}/similar_issues/)")
                tool_names.append(f"[GENERATE CUSTOM LABELS]({base_path}/custom_labels/) 💎")
                tool_names.append(f"[CI FEEDBACK]({base_path}/ci_feedback/) 💎")
                tool_names.append(f"[CUSTOM PROMPT]({base_path}/custom_prompt/) 💎")
-                tool_names.append(f"[SIMILAR ISSUE]({base_path}/similar_issues/)")
+                tool_names.append(f"[IMPLEMENT]({base_path}/implement/) 💎")

                descriptions = []
                descriptions.append("Generates PR description - title, type, summary, code walkthrough and labels")
@ -189,10 +190,11 @@ class PRHelpMessage:
                descriptions.append("Code suggestions for a specific component that changed in the PR")
                descriptions.append("Identifies code components that changed in the PR, and enables to interactively generate tests, docs, and code suggestions for each component")
                descriptions.append("Answering free-text questions about the PR")
+                descriptions.append("Automatically retrieves and presents similar issues")
                descriptions.append("Generates custom labels for the PR, based on specific guidelines defined by the user")
                descriptions.append("Generates feedback and analysis for a failed CI job")
                descriptions.append("Generates custom suggestions for improving the PR code, derived only from a specific guidelines prompt defined by the user")
-                descriptions.append("Automatically retrieves and presents similar issues")
+                descriptions.append("Generates implementation code from review suggestions")

                commands  =[]
                commands.append("`/describe`")
@ -204,10 +206,11 @@ class PRHelpMessage:
                commands.append("`/improve_component`")
                commands.append("`/analyze`")
                commands.append("`/ask`")
+                commands.append("`/similar_issue`")
                commands.append("`/generate_labels`")
                commands.append("`/checks`")
                commands.append("`/custom_prompt`")
-                commands.append("`/similar_issue`")
+                commands.append("`/implement`")

                checkbox_list = []
                checkbox_list.append(" - [ ] Run <!-- /describe -->")
@ -226,6 +229,7 @@ class PRHelpMessage:
                checkbox_list.append("[*]")
                checkbox_list.append("[*]")
                checkbox_list.append("[*]")
+                checkbox_list.append("[*]")

                if isinstance(self.git_provider, GithubProvider) and not get_settings().config.get('disable_checkboxes', False):
                    pr_comment += f"<table><tr align='left'><th align='left'>Tool</th><th align='left'>Description</th><th align='left'>Trigger Interactively :gem:</th></tr>"
--- a/pr_agent/tools/pr_reviewer.py
+++ b/pr_agent/tools/pr_reviewer.py
@ -384,7 +384,7 @@ class PRReviewer:
                get_logger().debug(f"Current labels:\n{current_labels}")
                if current_labels:
                    current_labels_filtered = [label for label in current_labels if
-                                               not label.lower().startswith('review effort [1-5]:') and not label.lower().startswith(
+                                               not label.lower().startswith('review effort') and not label.lower().startswith(
                                                   'possible security concern')]
                else:
                    current_labels_filtered = []
@ -402,20 +402,6 @@ class PRReviewer:
        Auto-approve a pull request if it meets the conditions for auto-approval.
        """
        if get_settings().pr_reviewer.enable_auto_approval:
-            maximal_review_effort = get_settings().pr_reviewer.maximal_review_effort
-            if maximal_review_effort < 5:
-                current_labels = self.git_provider.get_pr_labels()
-                for label in current_labels:
-                    if label.lower().startswith('review effort [1-5]:'):
-                        effort = int(label.split(':')[1].strip())
-                        if effort > maximal_review_effort:
-                            get_logger().info(
-                                f"Auto-approve error: PR review effort ({effort}) is higher than the maximal review effort "
-                                f"({maximal_review_effort}) allowed")
-                            self.git_provider.publish_comment(
-                                f"Auto-approve error: PR review effort ({effort}) is higher than the maximal review effort "
-                                f"({maximal_review_effort}) allowed")
-                            return
            is_auto_approved = self.git_provider.auto_approve()
            if is_auto_approved:
                get_logger().info("Auto-approved PR")
--- a/pr_agent/tools/ticket_pr_compliance_check.py
+++ b/pr_agent/tools/ticket_pr_compliance_check.py
@ -51,6 +51,11 @@ def extract_ticket_links_from_pr_description(pr_description, repo_path, base_url
                issue_number = match[5][1:]  # remove #
                if issue_number.isdigit() and len(issue_number) < 5 and repo_path:
                    github_tickets.add(f'{base_url_html.strip("/")}/{repo_path}/issues/{issue_number}')
+
+        if len(github_tickets) > 3:
+            get_logger().info(f"Too many tickets found in PR description: {len(github_tickets)}")
+            # Limit the number of tickets to 3
+            github_tickets = set(list(github_tickets)[:3])
    except Exception as e:
        get_logger().error(f"Error extracting tickets error= {e}",
                           artifact={"traceback": traceback.format_exc()})
--- a/pyproject.toml
+++ b/pyproject.toml
@ -31,7 +31,7 @@ dynamic = ["dependencies"]
 dependencies = { file = ["requirements.txt"] }

 [project.urls]
-"Homepage" = "https://github.com/Codium-ai/pr-agent"
+"Homepage" = "https://github.com/qodo-ai/pr-agent"
 "Documentation" = "https://pr-agent-docs.codium.ai/"

 [tool.setuptools]
Author	SHA1	Message	Date
ofir-frd	058df7b53d	feat: add pull request template	2025-02-05 16:32:45 +02:00
Hussam Lawen	deffdbbb89	Merge pull request #1517 from qodo-ai/security_policy_md Create SECURITY.md	2025-02-05 14:54:55 +02:00
Hussam Lawen	b29a19957c	Update SECURITY.md Co-authored-by: qodo-merge-pro-for-open-source[bot] <189517486+qodo-merge-pro-for-open-source[bot]@users.noreply.github.com>	2025-02-05 14:54:32 +02:00
Hussam Lawen	f209bc5323	Update SECURITY.md	2025-02-05 14:50:12 +02:00
Hussam Lawen	32890fec20	Create SECURITY.md	2025-02-05 14:03:32 +02:00
Tal	9ddd7c967a	Merge pull request #1515 from qodo-ai/create-code-of-conduct Create CODE_OF_CONDUCT.md	2025-02-05 11:28:10 +02:00
Tal	245c3ad523	Update CODE_OF_CONDUCT.md Co-authored-by: qodo-merge-pro-for-open-source[bot] <189517486+qodo-merge-pro-for-open-source[bot]@users.noreply.github.com>	2025-02-05 11:27:51 +02:00
ofir-frd	43decd9ff2	Update CODE_OF_CONDUCT.md	2025-02-05 11:25:06 +02:00
Tal	3af84aab5b	Merge pull request #1514 from qodo-ai/tr/improve_impact feat: improve code suggestions table with impact levels and styling	2025-02-05 11:20:16 +02:00
ofir-frd	3633863e90	Create CODE_OF_CONDUCT.md	2025-02-05 10:41:24 +02:00
mrT23	69f19f1abd	feat: improve code suggestions impact levels with configurable thresholds	2025-02-05 09:41:01 +02:00
mrT23	400146985a	feat: improve code suggestions table with impact levels and styling	2025-02-05 09:31:32 +02:00
mrT23	24bf875db6	fix: handle GitHub permission errors when editing comments	2025-02-03 07:51:44 +02:00
mrT23	9687b4df70	docs: update model selection guide with supported models list	2025-02-03 07:31:02 +02:00
Tal	d8fba02b48	Merge pull request #1509 from KennyDizi/main Define user_message_only_models list for using user prompt only model	2025-02-02 16:14:05 +02:00
Trung Dinh	a6482c37ce	Add o3-mini to user message only model list	2025-02-02 18:03:38 +07:00
Trung Dinh	83582bc935	Add support o3-mini model	2025-02-02 18:02:53 +07:00
Trung Dinh	4ac1e15bae	Refactoring user messages only flow	2025-02-02 18:01:44 +07:00
Trung Dinh	a48686bde9	Define USER_MESSAGE_ONLY_MODELS in the algo init file	2025-02-02 18:01:16 +07:00
Trung Dinh	7168d16386	Remove user_message_only_models from configuration file	2025-02-02 18:00:34 +07:00
Tal	dc21f71ee2	Merge pull request #1510 from PeterDaveHelloKitchen/OptimizeDockerfile Use `pip install` with `--no-cache-dir` in Dockerfiles	2025-02-02 07:30:13 +02:00
mrT23	7127a030b2	fix: improve error logging in GitHub polling service	2025-02-01 19:47:54 +02:00
Peter Dave Hello	8f340bce67	Use `pip install` with `--no-cache-dir` in Dockerfiles This will help minimize the Docker image size, as below: ``` REPOSITORY TAG IMAGE ID CREATED SIZE pr-agent after caed11a1ed9c 2 hours ago 1.48GB pr-agent before d6f12eb987b8 3 hours ago 1.59GB ```	2025-02-02 00:29:52 +08:00
Trung Dinh	48377e3c81	Add a null check for user_message_only_models before using it	2025-01-31 11:53:05 +07:00
Trung Dinh	7eb26b3220	Check current model is in user_message_only_models list	2025-01-31 11:25:51 +07:00
Trung Dinh	32ccb25575	Add user_message_only_models	2025-01-31 11:24:43 +07:00
mrT23	9aafe18f01	docs: add platform support notice for implement tool	2025-01-30 12:24:14 +02:00
Tal	4df9e03c4c	Merge pull request #1506 from qodo-ai/tr/fallback fix: add fallback for parsing AI responses with leading '+' symbols	2025-01-30 11:56:04 +02:00
mrT23	136c75a5ac	fix: add fallback for parsing AI responses with leading '+' symbols	2025-01-30 08:35:31 +02:00
mrT23	91b0f11cf2	docs: add link to article about effective AI code suggestions	2025-01-30 07:44:09 +02:00
Tal	50740f080b	Merge pull request #1500 from qodo-ai/of/add-contributing-file Add CONTRIBUTING.md with contribution guidelines and setup instructions	2025-01-28 15:39:49 +02:00
ofir-frd	ad5308c0a3	docs: add CONTRIBUTING.md with development guidelines and setup instructions	2025-01-28 11:55:27 +02:00
Tal	f383709629	Merge pull request #1498 from qodo-ai/tr/issue_formatting fix: update issue template fields and Discord link	2025-01-28 10:07:18 +02:00
mrT23	4d7fe07c16	fix: update issue template fields and Discord link	2025-01-28 09:59:59 +02:00
Tal	456d5aa233	Merge pull request #1495 from qodo-ai/of/issue_template fix: remove shell rendering from issue templates	2025-01-28 09:21:13 +02:00
ofir-frd	d50bfa4b06	fix: remove shell rendering from issue templates	2025-01-28 09:18:02 +02:00
mrT23	7393887381	Merge remote-tracking branch 'origin/main'	2025-01-28 08:36:47 +02:00
mrT23	9da4c9d776	fix: correct typo in code suggestions label description	2025-01-28 08:36:36 +02:00
Tal	251b4a6395	Update README.md	2025-01-28 03:29:44 +02:00
Tal	d85725c636	Merge pull request #1490 from qodo-ai/of/issues-fixes Update config.yml	2025-01-27 16:25:24 +02:00
ofir-frd	6ef586a617	Update miscellaneous.yml	2025-01-27 16:24:40 +02:00
ofir-frd	43991df2c4	Update bug-report.yml	2025-01-27 16:23:48 +02:00
ofir-frd	231d5c20d5	Update config.yml	2025-01-27 16:22:35 +02:00
Tal	9052cec391	Merge pull request #1478 from qodo-ai/of/issue_template Add GitHub issue templates for bug reports and feature requests	2025-01-27 16:21:17 +02:00
Tal	33ed6927fc	Update .github/ISSUE_TEMPLATE/miscellaneous.yml Co-authored-by: qodo-merge-pro-for-open-source[bot] <189517486+qodo-merge-pro-for-open-source[bot]@users.noreply.github.com>	2025-01-27 16:21:11 +02:00
ofir-frd	62aaeb267a	Update bug-report.yml	2025-01-27 16:20:24 +02:00
ofir-frd	a7bea3b166	feat: add miscellaneous issue template and update template configurations	2025-01-27 16:17:33 +02:00
ofir-frd	b81d686561	Update feature-request.yml	2025-01-27 16:02:29 +02:00
ofir-frd	e5e30f7bd3	Update bug-report.yml	2025-01-27 16:00:03 +02:00
mrT23	4bfd845877	docs: add wiki requirement notice for auto best practices feature	2025-01-27 10:07:30 +02:00
mrT23	e8a80264ca	fix: improve GitLab help message formatting with proper line breaks	2025-01-26 16:54:17 +02:00
mrT23	75f4c7f681	Merge branch 'tr/docs_best_practice'	2025-01-26 16:42:48 +02:00
Tal	2277a31661	Merge pull request #1485 from qodo-ai/tr/docs_best_practice Tr/docs best practice	2025-01-26 16:40:09 +02:00
mrT23	805d9cac69	docs: add auto best practices diagrams and wiki usage explanation	2025-01-26 16:39:25 +02:00
Tal	beffa8dfe4	Merge pull request #1486 from qodo-ai/hl/update_ticket_analysis feat: enhance ticket compliance analysis with human verification tracking	2025-01-26 15:58:22 +02:00
Hussam.lawen	a42c5f4f93	feat: limit number of tickets to analyze to 3 in compliance check	2025-01-26 14:31:29 +02:00
mrT23	63c98d30d9	docs: simplify wording and clarify exploration concept in best practices guide	2025-01-26 12:57:53 +02:00
Hussam.lawen	50c52e32c9	enter feat: enhance ticket compliance analysis with human verification tracking	2025-01-26 12:33:49 +02:00
mrT23	f48c95d113	order	2025-01-26 12:10:30 +02:00
mrT23	2ead9fe4df	typo	2025-01-26 12:07:48 +02:00
mrT23	4d52715d25	docs: add auto best practices documentation and configuration	2025-01-26 12:02:27 +02:00
ofir-frd	84d81deac0	Merge branch 'main' into of/issue_template	2025-01-26 09:23:54 +02:00
mrT23	83baac975d	docs: clarify code suggestion prompt field description for existing code	2025-01-26 09:16:52 +02:00
Tal	3f6fa5cccb	Merge pull request #1484 from qodo-ai/of/add-implement-to-help Add `IMPLEMENT` tool and reorganize help message content	2025-01-25 08:57:47 +02:00
mrT23	a7fbd694cc	docs: add January 2025 organization update notice and fix typo in prompts	2025-01-25 08:54:57 +02:00
ofir-frd	78b11fca4c	feat: add implement tool to help message and reorder tools list	2025-01-24 17:13:37 +02:00
mrT23	640c1d8dda	refactor: update review effort label format to include range indicator	2025-01-23 21:44:56 +02:00
mrT23	dfa98cdfa3	Merge remote-tracking branch 'origin/main'	2025-01-23 16:59:14 +02:00
mrT23	5518f1ca26	docs: update repository URLs from Codium-ai to qodo-ai	2025-01-23 16:59:04 +02:00
Tal	c4a70f4852	Update .github/ISSUE_TEMPLATE/bug-report.yml Co-authored-by: qodo-merge-pro[bot] <151058649+qodo-merge-pro[bot]@users.noreply.github.com>	2025-01-23 16:52:22 +02:00
Tal	363ea3eec8	Update .github/ISSUE_TEMPLATE/bug-report.yml Co-authored-by: qodo-merge-pro[bot] <151058649+qodo-merge-pro[bot]@users.noreply.github.com>	2025-01-23 16:51:12 +02:00
ofir-frd	97cbfe1c2b	fix: update issue template labels and descriptions for git providers and bug types	2025-01-23 16:27:26 +02:00
ofir-frd	68f2198549	feat: update issue template dropdowns for git providers and task types	2025-01-23 16:11:30 +02:00
ofir-frd	20bbe4187a	docs: reorder contact links in issue template config	2025-01-23 15:57:13 +02:00
ofir-frd	2f69c8989c	clean-up	2025-01-23 13:38:02 +02:00
ofir-frd	ed102dc730	feat: add GitHub issue templates for bug reports and feature requests	2025-01-23 13:35:30 +02:00
Tal	c2bad8ab29	Update index.md	2025-01-23 12:24:09 +02:00
mrT23	e9c1c91a4b	feat: enhance help message formatting and support for different git providers	2025-01-23 12:05:07 +02:00
Tal	eba116fedd	Merge pull request #1477 from qodo-ai/tr/shorter_label refactor: simplify review effort label format and remove maximal effo…	2025-01-23 11:49:11 +02:00
mrT23	94616a3429	refactor: simplify review effort label format and remove maximal effort limit	2025-01-23 11:20:58 +02:00
mrT23	c1fa22d068	refactor: simplify review effort label format and remove maximal effort limit	2025-01-23 11:18:00 +02:00
mrT23	4f1e4073e4	docs: fix wording in local installation guide	2025-01-23 09:08:38 +02:00
Tal	b320767c97	Merge pull request #1475 from Codium-ai/tr/docs24 docs: reorganize installation documentation structure	2025-01-23 08:53:44 +02:00
mrT23	cd5bdf9e59	docs: reorganize token requirements in installation documentation	2025-01-23 08:53:29 +02:00
mrT23	e8b8909ab7	docs: update pricing link from codium.ai to qodo.ai	2025-01-23 08:47:20 +02:00
mrT23	ee8cdcf2b2	docs: reorganize installation documentation structure	2025-01-23 08:45:47 +02:00
Tal	1cb21c6615	Merge pull request #1473 from KennyDizi/main Add support model deepseek/deepseek-reasoner	2025-01-23 08:07:53 +02:00
Tal	b5f52c5fea	Merge pull request #1469 from gryphon-ops/main Remove false log that file was modified, but no patch found for bitbucket server	2025-01-23 08:03:35 +02:00
mrT23	4e481c5088	docs: rebrand from Qodo Merge to PR-Agent in installation guides	2025-01-22 21:28:29 +02:00
Tal	7367c00c3d	Merge pull request #1474 from Codium-ai/tr/docs23 QM	2025-01-22 21:21:39 +02:00
mrT23	fb3aa8c96c	docs: fix punctuation in Chrome extension documentation	2025-01-22 21:20:44 +02:00
mrT23	983ce131f2	docs: rebrand from Qodo Merge Pro to Qodo Merge throughout documentation	2025-01-22 21:18:08 +02:00
mrT23	e571841b5c	docs: clarify distinction between PR-Agent and Qodo Merge throughout documentation	2025-01-22 21:11:46 +02:00
Tal	c537e9ff66	Merge pull request #1471 from Codium-ai/of/rebrand-readme README: Replace Codium and PR-Agent with Qodo and Qodo-Merge	2025-01-22 17:07:07 +02:00
ofir-frd	fc5454630a	docs: rebrand from Qodo-Merge to PR-Agent in README	2025-01-22 16:39:14 +02:00
Trung Dinh	c2ca79da0d	Combining system and user prompts for o1 series and deepseek-reasoner models	2025-01-22 20:33:43 +07:00
Trung Dinh	63f1d449ce	Add support model deepseek/deepseek-reasoner	2025-01-22 20:32:18 +07:00
ofir-frd	0adaddccdf	docs: update branding from PR-Agent to Qodo-Merge in README	2025-01-22 14:35:13 +02:00
ofir-frd	8a1f07dd6b	docs: clarify Qodo-Merge's open-source nature in README	2025-01-22 14:24:40 +02:00
ofir-frd	8e5d2a0f4d	docs: update branding from PR-Agent to Qodo-Merge in README	2025-01-22 14:18:23 +02:00
ofir-frd	4e1cae3869	docs: remove redundant row number in feature table	2025-01-22 10:16:05 +02:00
ofir-frd	7be26b665e	docs: update branding from PR-Agent to Qodo-Merge in README	2025-01-22 10:12:32 +02:00
Griffin Anspach	664f1938c9	Remove false log that file was modified, but no patch found for bitbucket server	2025-01-20 14:56:10 -05:00