test

Merge commit 'e878bbbe369c90433c1b261b5479d23c47734539' into hl/test_docstring
test
2025-07-09 23:30:38 +08:00 · 2023-11-20 00:42:29 +02:00 · 2023-11-15 10:37:31 +02:00 · 2023-11-14 20:31:01 +02:00
53 changed files with 400 additions and 1234 deletions
--- a/.github/workflows/pr-agent-review.yaml
+++ b/.github/workflows/pr-agent-review.yaml
@ -26,7 +26,5 @@ jobs:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          PINECONE.API_KEY: ${{ secrets.PINECONE_API_KEY }}
          PINECONE.ENVIRONMENT: ${{ secrets.PINECONE_ENVIRONMENT }}
          GITHUB_ACTION.AUTO_REVIEW: 'true'
          GITHUB_ACTION.AUTO_IMPROVE: 'true'
--- a/.pr_agent.toml
+++ b/.pr_agent.toml
@ -1,6 +0,0 @@
 [pr_reviewer]
 enable_review_labels_effort = true
 [pr_code_suggestions]
 summarize=true
--- a/INSTALL.md
+++ b/INSTALL.md
@ -1,5 +1,5 @@
-## Installation
+### Installation
 To get started with PR-Agent quickly, you first need to acquire two tokens:
@ -25,7 +25,6 @@ There are several ways to use PR-Agent:
 **BitBucket specific methods**
 - [Run as a Bitbucket Pipeline](INSTALL.md#run-as-a-bitbucket-pipeline)
 - [Run on a hosted app](INSTALL.md#run-on-a-hosted-bitbucket-app)
 - [Bitbucket server and data center](INSTALL.md#bitbucket-server-and-data-center)
 ---
 ### Use Docker image (no installation required)
@ -102,7 +101,6 @@ python3 -m pr_agent.cli --pr_url <pr_url> ask <your question>
 python3 -m pr_agent.cli --pr_url <pr_url> describe
 python3 -m pr_agent.cli --pr_url <pr_url> improve
 python3 -m pr_agent.cli --pr_url <pr_url> add_docs
 python3 -m pr_agent.cli --pr_url <pr_url> generate_labels
 python3 -m pr_agent.cli --issue_url <issue_url> similar_issue
 ...
 ```
@ -411,49 +409,10 @@ BITBUCKET_BEARER_TOKEN: <your token>
 You can get a Bitbucket token for your repository by following Repository Settings -> Security -> Access Tokens.
 Note that comments on a PR are not supported in Bitbucket Pipeline.
 ### Run on a hosted Bitbucket app
-### Run using CodiumAI-hosted Bitbucket app
+Please contact <support@codium.ai> if you're interested in a hosted BitBucket app solution that provides full functionality including PR reviews and comment handling. It's based on the [bitbucket_app.py](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/git_providers/bitbucket_provider.py) implmentation.
 Please contact <support@codium.ai> or visit [CodiumAI pricing page](https://www.codium.ai/pricing/) if you're interested in a hosted BitBucket app solution that provides full functionality including PR reviews and comment handling. It's based on the [bitbucket_app.py](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/git_providers/bitbucket_provider.py) implementation.
 ### Bitbucket Server and Data Center
 Login into your on-prem instance of Bitbucket with your service account username and password.
 Navigate to `Manage account`, `HTTP Access tokens`, `Create Token`.
 Generate the token and add it to .secret.toml under `bitbucket_server` section
 ```toml
 [bitbucket_server]
 bearer_token = "<your key>"
 ```
 #### Run it as CLI
 Modify `configuration.toml`:
 ```toml
 git_provider="bitbucket_server"
 ```
 and pass the Pull request URL:
 ```shell
 python cli.py --pr_url https://git.onpreminstanceofbitbucket.com/projects/PROJECT/repos/REPO/pull-requests/1 review
 ```
 #### Run it as service
 To run pr-agent as webhook, build the docker image:
 ```
 docker build . -t codiumai/pr-agent:bitbucket_server_webhook --target bitbucket_server_webhook -f docker/Dockerfile
 docker push codiumai/pr-agent:bitbucket_server_webhook  # Push to your Docker repository
 ```
 Navigate to `Projects` or `Repositories`, `Settings`, `Webhooks`, `Create Webhook`.
 Fill the name and URL, Authentication None select the Pull Request Opened checkbox to receive that event as webhook.
 The url should be ends with `/webhook`, example: https://domain.com/webhook
 =======
--- a/RELEASE_NOTES.md
+++ b/RELEASE_NOTES.md
@ -1,24 +1,5 @@
-## [Version 0.10] - 2023-11-15
+## Unreleased
- codiumai/pr-agent:0.10
+- review tool now posts persistent comments by default
 - codiumai/pr-agent:0.10-github_app
 - codiumai/pr-agent:0.10-bitbucket-app
 - codiumai/pr-agent:0.10-gitlab_webhook
 - codiumai/pr-agent:0.10-github_polling
 - codiumai/pr-agent:0.10-github_action
 ### Added::Algo
 - Review tool now works with [persistent comments](https://github.com/Codium-ai/pr-agent/pull/451) by default
 - Bitbucket now publishes review suggestions with [code links](https://github.com/Codium-ai/pr-agent/pull/428)
 - Enabling to limit [max number of tokens](https://github.com/Codium-ai/pr-agent/pull/437/files)
 - Support ['gpt-4-1106-preview'](https://github.com/Codium-ai/pr-agent/pull/437/files) model
 - Support for Google's [Vertex AI](https://github.com/Codium-ai/pr-agent/pull/436)
 - Implementing [thresholds](https://github.com/Codium-ai/pr-agent/pull/423) for incremental PR reviews
 - Decoupled custom labels from [PR type](https://github.com/Codium-ai/pr-agent/pull/431)
 ### Fixed
 - Fixed bug in [parsing quotes](https://github.com/Codium-ai/pr-agent/pull/446) in CLI
 - Preserve [user-added labels](https://github.com/Codium-ai/pr-agent/pull/433) in pull requests
 - Bug fixes in GitLab and BitBucket
 ## [Version 0.9] - 2023-10-29
 - codiumai/pr-agent:0.9
--- a/Usage.md
+++ b/Usage.md
@ -32,19 +32,12 @@ The [Tools Guide](./docs/TOOLS_GUIDE.md) provides a detailed description of the
 #### Ignoring files from analysis
 In some cases, you may want to exclude specific files or directories from the analysis performed by CodiumAI PR-Agent. This can be useful, for example, when you have files that are generated automatically or files that shouldn't be reviewed, like vendored code.
-To ignore files or directories, edit the **[ignore.toml](/pr_agent/settings/ignore.toml)** configuration file. This setting also exposes the following environment variables:
+To ignore files or directories, edit the **[ignore.toml](/pr_agent/settings/ignore.toml)** configuration file. This setting is also exposed the following environment variables:
 - `IGNORE.GLOB`
 - `IGNORE.REGEX`
-For example, to ignore python files in a PR with online usage, comment on a PR:
+See [dynaconf envvars documentation](https://www.dynaconf.com/envvars/).
 `/review --ignore.glob=['*.py']`
 To ignore python files in all PRs, set in a configuration file:
 ```
 [ignore]
 glob = ['*.py']
 ```
 #### git provider
 The [git_provider](pr_agent/settings/configuration.toml#L4) field in the configuration file determines the GIT provider that will be used by PR-Agent. Currently, the following providers are supported:
@ -66,7 +59,7 @@ The [git_provider](pr_agent/settings/configuration.toml#L4) field in the configu
 ### Working from a local repo (CLI)
 When running from your local repo (CLI), your local configuration file will be used.
-Examples of invoking the different tools via the CLI:
+Examples for invoking the different tools via the CLI:
 - **Review**:       `python -m pr_agent.cli --pr_url=<pr_url>  review`
 - **Describe**:     `python -m pr_agent.cli --pr_url=<pr_url>  describe`
@ -90,7 +83,7 @@ python -m pr_agent.cli --pr_url=<pr_url>  /review --pr_reviewer.extra_instructio
 publish_output=true
 verbosity_level=2
 ```
-This is useful for debugging or experimenting with different tools.
+This is useful for debugging or experimenting with the different tools.
 ### Online usage
@ -107,17 +100,17 @@ Commands for invoking the different tools via comments:
 To edit a specific configuration value, just add `--config_path=<value>` to any command.
-For example, if you want to edit the `review` tool configurations, you can run:
+For example if you want to edit the `review` tool configurations, you can run:
 ```
 /review --pr_reviewer.extra_instructions="..." --pr_reviewer.require_score_review=false
 ```
-Any configuration value in [configuration file](pr_agent/settings/configuration.toml) file can be similarly edited. Comment `/config` to see the list of available configurations.
+Any configuration value in [configuration file](pr_agent/settings/configuration.toml) file can be similarly edited. comment `/config` to see the list of available configurations.
 ### Working with GitHub App
 When running PR-Agent from GitHub App, the default [configuration file](pr_agent/settings/configuration.toml) from a pre-built docker will be initially loaded.
-By uploading a local `.pr_agent.toml` file to the root of the repo's main branch, you can edit and customize any configuration parameter. Note that you need to upload `.pr_agent.toml` prior to creating a PR, in order for the configuration to take effect.
+By uploading a local `.pr_agent.toml` file, you can edit and customize any configuration parameter.
 For example, if you set in `.pr_agent.toml`:
@ -126,7 +119,7 @@ For example, if you set in `.pr_agent.toml`:
 num_code_suggestions=1
 ```
-Then you will overwrite the default number of code suggestions to 1.
+Than you will overwrite the default number of code suggestions to be 1.
 #### GitHub app automatic tools
 The [github_app](pr_agent/settings/configuration.toml#L76) section defines GitHub app-specific configurations.  
@ -140,7 +133,7 @@ The GitHub app can respond to the following actions on a PR:
 4. `review_requested` - Specifically requesting review (in the PR reviewers list) from the `github-actions[bot]` user
 The configuration parameter `handle_pr_actions` defines the list of actions for which the GitHub app will trigger the PR-Agent.  
-The configuration parameter `pr_commands` defines the list of tools that will be **run automatically** when one of the above actions happens (e.g., a new PR is opened):
+The configuration parameter `pr_commands` defines the list of tools that will be **run automatically** when one of the above action happens (e.g. a new PR is opened):
 ```
 [github_app]
 handle_pr_actions = ['opened', 'reopened', 'ready_for_review', 'review_requested']
@ -180,11 +173,11 @@ push_commands = [
    "/auto_review -i --pr_reviewer.remove_previous_review_comment=true",
 ]
 ```
-This means that when new code is pushed to the PR, the PR-Agent will run the `describe` and incremental `auto_review` tools.  
+The means that when new code is pushed to the PR, the PR-Agent will run the `describe` and incremental `auto_review` tools.  
 For the describe tool, the `add_original_user_description` and `keep_original_user_title` parameters will be set to true.  
 For the `auto_review` tool, it will run in incremental mode, and the `remove_previous_review_comment` parameter will be set to true.
-Much like the configurations for `pr_commands`, you can override the default tool parameters by uploading a local configuration file to the root of your repo.
+Much like the configurations for `pr_commands`, you can override the default tool paramteres by uploading a local configuration file to the root of your repo.
 #### Editing the prompts
 The prompts for the various PR-Agent tools are defined in the `pr_agent/settings` folder.
@ -310,24 +303,6 @@ key = ...
 Also review the [AiHandler](pr_agent/algo/ai_handler.py) file for instruction how to set keys for other models.
 #### Vertex AI
 To use Google's Vertex AI platform and its associated models (chat-bison/codechat-bison) set:
 ``` 
 [config] # in configuration.toml
 model = "vertex_ai/codechat-bison"
 fallback_models="vertex_ai/codechat-bison"
 [vertexai] # in .secrets.toml
 vertex_project = "my-google-cloud-project"
 vertex_location = ""
 ```
 Your [application default credentials](https://cloud.google.com/docs/authentication/application-default-credentials) will be used for authentication so there is no need to set explicit credentials in most environments.
 If you do want to set explicit credentials then you can use the `GOOGLE_APPLICATION_CREDENTIALS` environment variable set to a path to a json credentials file.
 ### Working with large PRs
 The default mode of CodiumAI is to have a single call per tool, using GPT-4, which has a token limit of 8000 tokens.
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@ -14,10 +14,6 @@ FROM base as bitbucket_app
 ADD pr_agent pr_agent
 CMD ["python", "pr_agent/servers/bitbucket_app.py"]
 FROM base as bitbucket_server_webhook
 ADD pr_agent pr_agent
 CMD ["python", "pr_agent/servers/bitbucket_server_webhook.py"]
 FROM base as github_polling
 ADD pr_agent pr_agent
 CMD ["python", "pr_agent/servers/github_polling.py"]
--- a/docs/IMPROVE.md
+++ b/docs/IMPROVE.md
@ -1,6 +1,6 @@
 # Improve Tool
-The `improve` tool scans the PR code changes, and automatically generates committable suggestions for improving the PR code.
+The `improve` tool scans the PR code changes, and automatically generate committable suggestions for improving the PR code.
 It can be invoked manually by commenting on any PR:
 ```
 /improve
@ -17,7 +17,7 @@ An extended mode, which does not involve PR Compression and provides more compre
 /improve --extended
 ```
 Note that the extended mode divides the PR code changes into chunks, up to the token limits, where each chunk is handled separately (multiple calls to GPT-4).
-Hence, the total number of suggestions is proportional to the number of chunks, i.e., the size of the PR.
+Hence, the total number of suggestions is proportional to the number of chunks, i.e. the size of the PR.
 ### Configuration options
@ -33,23 +33,13 @@ Under the section 'pr_code_suggestions', the [configuration file](./../pr_agent/
 - `max_number_of_calls`: maximum number of chunks. Default is 5.
 - `final_clip_factor`: factor to remove suggestions with low confidence. Default is 0.9.
 #### summarize mode
 - `summarize`: if set to true, the tool will present the code suggestions in a compact way. Default is false.
 In this mode, instead of presenting committable suggestions, the different suggestions will be combined into a single compact comment, with significantly smaller PR footprint.
 For example:
 `/improve --pr_code_suggestions.summarize=true`
 <kbd><img src=./../pics/improved_summerize_open.png width="768"></kbd>
 #### A note on code suggestions quality
- With the current level of AI for code (GPT-4), mistakes can happen. Not all the suggestions will be perfect, and a user should not accept all of them automatically.
+- With current level of AI for code (GPT-4), mistakes can happen. Not all the suggestions will be perfect, and a user should not accept all of them automatically.
 - Suggestions are not meant to be [simplistic](./../pr_agent/settings/pr_code_suggestions_prompts.toml#L34). Instead, they aim to give deep feedback and raise questions, ideas and thoughts to the user, who can then use his judgment, experience, and understanding of the code base.
 - Recommended to use the 'extra_instructions' field to guide the model to suggestions that are more relevant to the specific needs of the project.
- Best quality will be obtained by using 'improve --extended' mode.
+- Best quality will be obtained by using 'improve --extended' mode.
--- a/docs/REVIEW.md
+++ b/docs/REVIEW.md
@ -16,22 +16,17 @@ The `review` tool can also be triggered automatically every time a new PR is ope
 Under the section 'pr_reviewer', the [configuration file](./../pr_agent/settings/configuration.toml#L16) contains options to customize the 'review' tool:
 #### enable\\disable features
 - `require_focused_review`: if set to true, the tool will add a section - 'is the PR a focused one'. Default is false.
 - `require_score_review`: if set to true, the tool will add a section that scores the PR. Default is false.
 - `require_tests_review`: if set to true, the tool will add a section that checks if the PR contains tests. Default is true.
 - `require_security_review`: if set to true, the tool will add a section that checks if the PR contains security issues. Default is true.
 - `require_estimate_effort_to_review`: if set to true, the tool will add a section that estimates thed effort needed to review the PR. Default is true.
 #### general options
 - `num_code_suggestions`: number of code suggestions provided by the 'review' tool. Default is 4.
 - `inline_code_comments`: if set to true, the tool will publish the code suggestions as comments on the code diff. Default is false.
 - `automatic_review`: if set to false, no automatic reviews will be done. Default is true.
 - `remove_previous_review_comment`: if set to true, the tool will remove the previous review comment before adding a new one. Default is false.
- `persistent_comment`: if set to true, the review comment will be persistent, meaning that every new review request will edit the previous one. Default is true.
+- `persistent_comment`: if set to true, the review comment will be persistent. Default is true.
 - `extra_instructions`: Optional extra instructions to the tool. For example: "focus on the changes in the file X. Ignore change in ...".
 #### review labels
 - `enable_review_labels_security`: if set to true, the tool will publish a 'possible security issue' label if it detects a security issue. Default is true.
 - `enable_review_labels_effort`: if set to true, the tool will publish a 'Review effort [1-5]: x' label. Default is false.
 - To enable `custom labels`, apply the configuration changes described [here](./GENERATE_CUSTOM_LABELS.md#configuration-changes) 
 ####  Incremental Mode
 For an incremental review, which only considers changes since the last PR-Agent review, this can be useful when working on the PR in an iterative manner, and you want to focus on the changes since the last review instead of reviewing the entire PR again, the following command can be used:
--- a/pics/improved_summerize_closed.png
+++ b/pics/improved_summerize_closed.png
--- a/pics/improved_summerize_open.png
+++ b/pics/improved_summerize_open.png
--- a/pr_agent/algo/init.py
+++ b/pr_agent/algo/init.py
@ -13,9 +13,5 @@ MAX_TOKENS = {
    'claude-2': 100000,
    'command-nightly': 4096,
    'replicate/llama-2-70b-chat:2c1608e18606fad2812020dc541930f2d0495ce32eee50074220b87300bc16e1': 4096,
-    'meta-llama/Llama-2-7b-chat-hf': 4096,
+    'meta-llama/Llama-2-7b-chat-hf': 4096
    'vertex_ai/codechat-bison': 6144,
    'vertex_ai/codechat-bison-32k': 32000,
    'codechat-bison': 6144,
    'codechat-bison-32k': 32000,
 }
--- a/pr_agent/algo/ai_handler.py
+++ b/pr_agent/algo/ai_handler.py
@ -23,43 +23,39 @@ class AiHandler:
        Initializes the OpenAI API key and other settings from a configuration file.
        Raises a ValueError if the OpenAI key is missing.
        """
-        self.azure = False
+        try:
        if get_settings().get("OPENAI.KEY", None):
            openai.api_key = get_settings().openai.key
            litellm.openai_key = get_settings().openai.key
-        if get_settings().get("litellm.use_client"):
+            if get_settings().get("litellm.use_client"):
-            litellm_token = get_settings().get("litellm.LITELLM_TOKEN")
+                litellm_token = get_settings().get("litellm.LITELLM_TOKEN")
-            assert litellm_token, "LITELLM_TOKEN is required"
+                assert litellm_token, "LITELLM_TOKEN is required"
-            os.environ["LITELLM_TOKEN"] = litellm_token
+                os.environ["LITELLM_TOKEN"] = litellm_token
-            litellm.use_client = True
+                litellm.use_client = True
-        if get_settings().get("OPENAI.ORG", None):
+            self.azure = False
-            litellm.organization = get_settings().openai.org
+            if get_settings().get("OPENAI.ORG", None):
-        if get_settings().get("OPENAI.API_TYPE", None):
+                litellm.organization = get_settings().openai.org
-            if get_settings().openai.api_type == "azure":
+            if get_settings().get("OPENAI.API_TYPE", None):
-                self.azure = True
+                if get_settings().openai.api_type == "azure":
-                litellm.azure_key = get_settings().openai.key
+                    self.azure = True
-        if get_settings().get("OPENAI.API_VERSION", None):
+                    litellm.azure_key = get_settings().openai.key
-            litellm.api_version = get_settings().openai.api_version
+            if get_settings().get("OPENAI.API_VERSION", None):
-        if get_settings().get("OPENAI.API_BASE", None):
+                litellm.api_version = get_settings().openai.api_version
-            litellm.api_base = get_settings().openai.api_base
+            if get_settings().get("OPENAI.API_BASE", None):
-        if get_settings().get("ANTHROPIC.KEY", None):
+                litellm.api_base = get_settings().openai.api_base
-            litellm.anthropic_key = get_settings().anthropic.key
+            if get_settings().get("ANTHROPIC.KEY", None):
-        if get_settings().get("COHERE.KEY", None):
+                litellm.anthropic_key = get_settings().anthropic.key
-            litellm.cohere_key = get_settings().cohere.key
+            if get_settings().get("COHERE.KEY", None):
-        if get_settings().get("REPLICATE.KEY", None):
+                litellm.cohere_key = get_settings().cohere.key
-            litellm.replicate_key = get_settings().replicate.key
+            if get_settings().get("REPLICATE.KEY", None):
-        if get_settings().get("REPLICATE.KEY", None):
+                litellm.replicate_key = get_settings().replicate.key
-            litellm.replicate_key = get_settings().replicate.key
+            if get_settings().get("REPLICATE.KEY", None):
-        if get_settings().get("HUGGINGFACE.KEY", None):
+                litellm.replicate_key = get_settings().replicate.key
-            litellm.huggingface_key = get_settings().huggingface.key
+            if get_settings().get("HUGGINGFACE.KEY", None):
-            if get_settings().get("HUGGINGFACE.API_BASE", None):
+                litellm.huggingface_key = get_settings().huggingface.key
-                litellm.api_base = get_settings().huggingface.api_base
+                if get_settings().get("HUGGINGFACE.API_BASE", None):
-        if get_settings().get("VERTEXAI.VERTEX_PROJECT", None):
+                    litellm.api_base = get_settings().huggingface.api_base
-            litellm.vertex_project = get_settings().vertexai.vertex_project
+        except AttributeError as e:
-            litellm.vertex_location = get_settings().get(
+            raise ValueError("OpenAI key is required") from e
                "VERTEXAI.VERTEX_LOCATION", None
            )
    @property
    def deployment_id(self):
--- a/pr_agent/algo/file_filter.py
+++ b/pr_agent/algo/file_filter.py
@ -11,12 +11,7 @@ def filter_ignored(files):
    try:
        # load regex patterns, and translate glob patterns to regex
        patterns = get_settings().ignore.regex
-        if isinstance(patterns, str):
+        patterns += [fnmatch.translate(glob) for glob in get_settings().ignore.glob]
            patterns = [patterns]
        glob_setting = get_settings().ignore.glob
        if isinstance(glob_setting, str): # --ignore.glob=[.*utils.py], --ignore.glob=.*utils.py
            glob_setting = glob_setting.strip('[]').split(",")
        patterns += [fnmatch.translate(glob) for glob in glob_setting]
        # compile all valid patterns
        compiled_patterns = []
--- a/pr_agent/algo/language_handler.py
+++ b/pr_agent/algo/language_handler.py
@ -3,7 +3,8 @@ from typing import Dict
 from pr_agent.config_loader import get_settings
-
+language_extension_map_org = get_settings().language_extension_map_org
 language_extension_map = {k.lower(): v for k, v in language_extension_map_org.items()}
 # Bad Extensions, source: https://github.com/EleutherAI/github-downloader/blob/345e7c4cbb9e0dc8a0615fd995a08bf9d73b3fe6/download_repo_text.py  # noqa: E501
 bad_extensions = get_settings().bad_extensions.default
@ -28,8 +29,6 @@ def sort_files_by_main_languages(languages: Dict, files: list):
    # languages_sorted = sorted(languages, key=lambda x: x[1], reverse=True)
    # get all extensions for the languages
    main_extensions = []
    language_extension_map_org = get_settings().language_extension_map_org
    language_extension_map = {k.lower(): v for k, v in language_extension_map_org.items()}
    for language in languages_sorted_list:
        if language.lower() in language_extension_map:
            main_extensions.append(language_extension_map[language.lower()])
--- a/pr_agent/algo/pr_processing.py
+++ b/pr_agent/algo/pr_processing.py
@ -10,7 +10,7 @@ from github import RateLimitExceededException
 from pr_agent.algo.git_patch_processing import convert_to_hunks_with_lines_numbers, extend_patch, handle_patch_deletions
 from pr_agent.algo.language_handler import sort_files_by_main_languages
 from pr_agent.algo.file_filter import filter_ignored
-from pr_agent.algo.token_handler import TokenHandler
+from pr_agent.algo.token_handler import TokenHandler, get_token_encoder
 from pr_agent.algo.utils import get_max_tokens
 from pr_agent.config_loader import get_settings
 from pr_agent.git_providers.git_provider import FilePatchInfo, GitProvider, EDIT_TYPE
@ -282,7 +282,7 @@ def find_line_number_of_relevant_line_in_file(diff_files: List[FilePatchInfo],
        r"^@@ -(\d+)(?:,(\d+))? \+(\d+)(?:,(\d+))? @@[ ]?(.*)")
    for file in diff_files:
-        if file.filename and (file.filename.strip() == relevant_file):
+        if file.filename.strip() == relevant_file:
            patch = file.patch
            patch_lines = patch.splitlines()
@ -326,6 +326,35 @@ def find_line_number_of_relevant_line_in_file(diff_files: List[FilePatchInfo],
    return position, absolute_position
 def clip_tokens(text: str, max_tokens: int) -> str:
    """
    Clip the number of tokens in a string to a maximum number of tokens.
    Args:
        text (str): The string to clip.
        max_tokens (int): The maximum number of tokens allowed in the string.
    Returns:
        str: The clipped string.
    """
    if not text:
        return text
    try:
        encoder = get_token_encoder()
        num_input_tokens = len(encoder.encode(text))
        if num_input_tokens <= max_tokens:
            return text
        num_chars = len(text)
        chars_per_token = num_chars / num_input_tokens
        num_output_chars = int(chars_per_token * max_tokens)
        clipped_text = text[:num_output_chars]
        return clipped_text
    except Exception as e:
        get_logger().warning(f"Failed to clip tokens: {e}")
        return text
 def get_pr_multi_diffs(git_provider: GitProvider,
                       token_handler: TokenHandler,
                       model: str,
--- a/pr_agent/algo/utils.py
+++ b/pr_agent/algo/utils.py
@ -11,7 +11,6 @@ import yaml
 from starlette_context import context
 from pr_agent.algo import MAX_TOKENS
 from pr_agent.algo.token_handler import get_token_encoder
 from pr_agent.config_loader import get_settings, global_settings
 from pr_agent.log import get_logger
@ -58,8 +57,7 @@ def convert_to_markdown(output_data: dict, gfm_supported: bool=True) -> str:
            emoji = emojis.get(key, "")
            if key.lower() == 'code feedback':
                if gfm_supported:
-                    markdown_text += f"\n\n- "
+                    markdown_text += f"\n\n- **<details><summary> { emoji } Code feedback:**</summary>\n\n"
                    markdown_text += f"<details><summary> { emoji } Code feedback:</summary>\n\n"
                else:
                    markdown_text += f"\n\n- **{emoji} Code feedback:**\n\n"
            else:
@ -100,9 +98,9 @@ def parse_code_suggestion(code_suggestions: dict, gfm_supported: bool=True) -> s
                markdown_text += f"    - **{code_key}:**\n{code_str_indented}\n"
        else:
            if "relevant file" in sub_key.lower():
-                markdown_text += f"\n  - **{sub_key}:** {sub_value}  \n"
+                markdown_text += f"\n  - **{sub_key}:** {sub_value}\n"
            else:
-                markdown_text += f"   **{sub_key}:** {sub_value}  \n"
+                markdown_text += f"   **{sub_key}:** {sub_value}\n"
            if not gfm_supported:
                if "relevant line" not in sub_key.lower(): # nicer presentation
                        # markdown_text = markdown_text.rstrip('\n') + "\\\n" # works for gitlab
@ -284,43 +282,42 @@ def _fix_key_value(key: str, value: str):
    try:
        value = yaml.safe_load(value)
    except Exception as e:
-        get_logger().debug(f"Failed to parse YAML for config override {key}={value}", exc_info=e)
+        get_logger().error(f"Failed to parse YAML for config override {key}={value}", exc_info=e)
    return key, value
-def load_yaml(response_text: str) -> dict:
+def load_yaml(review_text: str) -> dict:
-    response_text = response_text.removeprefix('```yaml').rstrip('`')
+    test = 1
    review_text = review_text.removeprefix('```yaml').rstrip('`')
    try:
-        data = yaml.safe_load(response_text)
+        data = yaml.safe_load(review_text)
    except Exception as e:
        get_logger().error(f"Failed to parse AI prediction: {e}")
-        data = try_fix_yaml(response_text)
+        data = try_fix_yaml(review_text)
    return data
-def try_fix_yaml(response_text: str) -> dict:
+def try_fix_yaml(review_text: str) -> dict:
-    response_text_lines = response_text.split('\n')
+    review_text_lines = review_text.split('\n')
    keys = ['relevant line:', 'suggestion content:', 'relevant file:']
    # first fallback - try to convert 'relevant line: ...' to relevant line: |-\n        ...'
-    response_text_lines_copy = response_text_lines.copy()
+    review_text_lines_copy = review_text_lines.copy()
-    for i in range(0, len(response_text_lines_copy)):
+    for i in range(0, len(review_text_lines_copy)):
-        for key in keys:
+        if 'relevant line:' in review_text_lines_copy[i] and not '|-' in review_text_lines_copy[i]:
-            if key in response_text_lines_copy[i] and not '|-' in response_text_lines_copy[i]:
+            review_text_lines_copy[i] = review_text_lines_copy[i].replace('relevant line: ',
-                response_text_lines_copy[i] = response_text_lines_copy[i].replace(f'{key}',
+                                                    'relevant line: |-\n        ')
                                                                                  f'{key} |-\n        ')
    try:
-        data = yaml.safe_load('\n'.join(response_text_lines_copy))
+        data = yaml.load('\n'.join(review_text_lines_copy), Loader=yaml.SafeLoader)
-        get_logger().info(f"Successfully parsed AI prediction after adding |-\n")
+        get_logger().info(f"Successfully parsed AI prediction after adding |-\n        to relevant line")
        return data
    except:
-        get_logger().info(f"Failed to parse AI prediction after adding |-\n")
+        get_logger().debug(f"Failed to parse AI prediction after adding |-\n        to relevant line")
    # second fallback - try to remove last lines
    data = {}
-    for i in range(1, len(response_text_lines)):
+    for i in range(1, len(review_text_lines)):
-        response_text_lines_tmp = '\n'.join(response_text_lines[:-i])
+        review_text_lines_tmp = '\n'.join(review_text_lines[:-i])
        try:
-            data = yaml.safe_load(response_text_lines_tmp,)
+            data = yaml.load(review_text_lines_tmp, Loader=yaml.SafeLoader)
            get_logger().info(f"Successfully parsed AI prediction after removing {i} lines")
            break
        except:
@ -340,15 +337,12 @@ def set_custom_labels(variables):
        labels_list = f"      - {labels_list}" if labels_list else ""
        variables["custom_labels"] = labels_list
        return
-    #final_labels = ""
+    final_labels = ""
    #for k, v in labels.items():
    #    final_labels += f"      - {k} ({v['description']})\n"
    #variables["custom_labels"] = final_labels
    #variables["custom_labels_examples"] = f"      - {list(labels.keys())[0]}"
    variables["custom_labels_class"] = "class Label(str, Enum):"
    for k, v in labels.items():
-        description = v['description'].strip('\n').replace('\n', '\\n')
+        final_labels += f"      - {k} ({v['description']})\n"
-        variables["custom_labels_class"] += f"\n    {k.lower().replace(' ', '_')} = '{k}' # {description}"
+    variables["custom_labels"] = final_labels
    variables["custom_labels_examples"] = f"      - {list(labels.keys())[0]}"
 def get_user_labels(current_labels: List[str] = None):
    """
@ -380,34 +374,3 @@ def get_max_tokens(model):
        max_tokens_model = min(settings.config.max_model_tokens, max_tokens_model)
        # get_logger().debug(f"limiting max tokens to {max_tokens_model}")
    return max_tokens_model
 def clip_tokens(text: str, max_tokens: int, add_three_dots=True) -> str:
    """
    Clip the number of tokens in a string to a maximum number of tokens.
    Args:
        text (str): The string to clip.
        max_tokens (int): The maximum number of tokens allowed in the string.
        add_three_dots (bool, optional): A boolean indicating whether to add three dots at the end of the clipped
    Returns:
        str: The clipped string.
    """
    if not text:
        return text
    try:
        encoder = get_token_encoder()
        num_input_tokens = len(encoder.encode(text))
        if num_input_tokens <= max_tokens:
            return text
        num_chars = len(text)
        chars_per_token = num_chars / num_input_tokens
        num_output_chars = int(chars_per_token * max_tokens)
        clipped_text = text[:num_output_chars]
        if add_three_dots:
            clipped_text += "...(truncated)"
        return clipped_text
    except Exception as e:
        get_logger().warning(f"Failed to clip tokens: {e}")
        return text
--- a/pr_agent/cli.py
+++ b/pr_agent/cli.py
@ -23,22 +23,18 @@ For example:
 - cli.py --issue_url=... similar_issue
 Supported commands:
- review / review_pr - Add a review that includes a summary of the PR and specific suggestions for improvement.
+-review / review_pr - Add a review that includes a summary of the PR and specific suggestions for improvement.
- ask / ask_question [question] - Ask a question about the PR.
+-ask / ask_question [question] - Ask a question about the PR.
- describe / describe_pr - Modify the PR title and description based on the PR's contents.
+-describe / describe_pr - Modify the PR title and description based on the PR's contents.
- improve / improve_code - Suggest improvements to the code in the PR as pull request comments ready to commit.
+-improve / improve_code - Suggest improvements to the code in the PR as pull request comments ready to commit.
 Extended mode ('improve --extended') employs several calls, and provides a more thorough feedback
- reflect - Ask the PR author questions about the PR.
+-reflect - Ask the PR author questions about the PR.
- update_changelog - Update the changelog based on the PR's contents.
+-update_changelog - Update the changelog based on the PR's contents.
 - add_docs
 - generate_labels
 Configuration:
--- a/pr_agent/git_providers/init.py
+++ b/pr_agent/git_providers/init.py
@ -1,6 +1,5 @@
 from pr_agent.config_loader import get_settings
 from pr_agent.git_providers.bitbucket_provider import BitbucketProvider
 from pr_agent.git_providers.bitbucket_server_provider import BitbucketServerProvider
 from pr_agent.git_providers.codecommit_provider import CodeCommitProvider
 from pr_agent.git_providers.github_provider import GithubProvider
 from pr_agent.git_providers.gitlab_provider import GitLabProvider
@ -13,7 +12,6 @@ _GIT_PROVIDERS = {
    'github': GithubProvider,
    'gitlab': GitLabProvider,
    'bitbucket': BitbucketProvider,
    'bitbucket_server': BitbucketServerProvider,
    'azure': AzureDevopsProvider,
    'codecommit': CodeCommitProvider,
    'local' : LocalGitProvider,
--- a/pr_agent/git_providers/azuredevops_provider.py
+++ b/pr_agent/git_providers/azuredevops_provider.py
@ -14,8 +14,9 @@ try:
 except ImportError:
    AZURE_DEVOPS_AVAILABLE = False
 from ..algo.pr_processing import clip_tokens
 from ..config_loader import get_settings
-from ..algo.utils import load_large_diff, clip_tokens
+from ..algo.utils import load_large_diff
 from ..algo.language_handler import is_valid_file
 from .git_provider import EDIT_TYPE, FilePatchInfo
--- a/pr_agent/git_providers/bitbucket_provider.py
+++ b/pr_agent/git_providers/bitbucket_provider.py
@ -153,29 +153,17 @@ class BitbucketProvider(GitProvider):
        self.diff_files = diff_files
        return diff_files
-    def get_latest_commit_url(self):
+    def publish_persistent_comment(self, pr_comment: str, initial_text: str, updated_text: str):
        return self.pr.data['source']['commit']['links']['html']['href']
    def get_comment_url(self, comment):
        return comment.data['links']['html']['href']
    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool = True):
        try:
            for comment in self.pr.comments():
                body = comment.raw
-                if initial_header in body:
+                if initial_text in body:
-                    latest_commit_url = self.get_latest_commit_url()
+                    if updated_text:
-                    comment_url = self.get_comment_url(comment)
+                        pr_comment_updated = pr_comment.replace(initial_text, updated_text)
                    if update_header:
                        updated_header = f"{initial_header}\n\n### (review updated until commit {latest_commit_url})\n"
                        pr_comment_updated = pr_comment.replace(initial_header, updated_header)
                    else:
                        pr_comment_updated = pr_comment
                    get_logger().info(f"Persistent mode- updating comment {comment_url} to latest review message")
                    d = {"content": {"raw": pr_comment_updated}}
                    response = comment._update_data(comment.put(None, data=d))
                    self.publish_comment(
                        f"**[Persistent review]({comment_url})** updated to latest commit {latest_commit_url}")
                    return
        except Exception as e:
            get_logger().exception(f"Failed to update persistent review, error: {e}")
@ -228,10 +216,6 @@ class BitbucketProvider(GitProvider):
        )
        return response
    def get_line_link(self, relevant_file: str, relevant_line_start: int, relevant_line_end: int = None) -> str:
        link = f"{self.pr_url}/#L{relevant_file}T{relevant_line_start}"
        return link
    def generate_link_to_relevant_line_number(self, suggestion) -> str:
        try:
            relevant_file = suggestion['relevant file'].strip('`').strip("'")
@ -254,15 +238,7 @@ class BitbucketProvider(GitProvider):
    def publish_inline_comments(self, comments: list[dict]):
        for comment in comments:
-            if 'position' in comment:
+            self.publish_inline_comment(comment['body'], comment['position'], comment['path'])
                self.publish_inline_comment(comment['body'], comment['position'], comment['path'])
            elif 'start_line' in comment: # multi-line comment
                # note that bitbucket does not seem to support range - only a comment on a single line - https://community.developer.atlassian.com/t/api-post-endpoint-for-inline-pull-request-comments/60452
                self.publish_inline_comment(comment['body'], comment['start_line'], comment['path'])
            elif 'line' in comment: # single-line comment
                self.publish_inline_comment(comment['body'], comment['line'], comment['path'])
            else:
                get_logger().error(f"Could not publish inline comment {comment}")
    def get_title(self):
        return self.pr.title
--- a/pr_agent/git_providers/bitbucket_server_provider.py
+++ b/pr_agent/git_providers/bitbucket_server_provider.py
@ -1,351 +0,0 @@
 import json
 from typing import Optional, Tuple
 from urllib.parse import urlparse
 import requests
 from atlassian.bitbucket import Bitbucket
 from starlette_context import context
 from .git_provider import FilePatchInfo, GitProvider, EDIT_TYPE
 from ..algo.pr_processing import find_line_number_of_relevant_line_in_file
 from ..algo.utils import load_large_diff
 from ..config_loader import get_settings
 from ..log import get_logger
 class BitbucketServerProvider(GitProvider):
    def __init__(
        self, pr_url: Optional[str] = None, incremental: Optional[bool] = False
    ):
        s = requests.Session()
        try:
            bearer = context.get("bitbucket_bearer_token", None)
            s.headers["Authorization"] = f"Bearer {bearer}"
        except Exception:
            s.headers[
                "Authorization"
            ] = f'Bearer {get_settings().get("BITBUCKET_SERVER.BEARER_TOKEN", None)}'
        s.headers["Content-Type"] = "application/json"
        self.headers = s.headers
        self.bitbucket_server_url = None
        self.workspace_slug = None
        self.repo_slug = None
        self.repo = None
        self.pr_num = None
        self.pr = None
        self.pr_url = pr_url
        self.temp_comments = []
        self.incremental = incremental
        self.diff_files = None
        self.bitbucket_pull_request_api_url = pr_url
        self.bitbucket_server_url = self._parse_bitbucket_server(url=pr_url)
        self.bitbucket_client = Bitbucket(url=self.bitbucket_server_url,
                                          token=get_settings().get("BITBUCKET_SERVER.BEARER_TOKEN", None))
        if pr_url:
            self.set_pr(pr_url)
    def get_repo_settings(self):
        try:
            url = (f"{self.bitbucket_server_url}/projects/{self.workspace_slug}/repos/{self.repo_slug}/src/"
                   f"{self.pr.destination_branch}/.pr_agent.toml")
            response = requests.request("GET", url, headers=self.headers)
            if response.status_code == 404:  # not found
                return ""
            contents = response.text.encode('utf-8')
            return contents
        except Exception:
            return ""
    def publish_code_suggestions(self, code_suggestions: list) -> bool:
        """
        Publishes code suggestions as comments on the PR.
        """
        post_parameters_list = []
        for suggestion in code_suggestions:
            body = suggestion["body"]
            relevant_file = suggestion["relevant_file"]
            relevant_lines_start = suggestion["relevant_lines_start"]
            relevant_lines_end = suggestion["relevant_lines_end"]
            if not relevant_lines_start or relevant_lines_start == -1:
                if get_settings().config.verbosity_level >= 2:
                    get_logger().exception(
                        f"Failed to publish code suggestion, relevant_lines_start is {relevant_lines_start}"
                    )
                continue
            if relevant_lines_end < relevant_lines_start:
                if get_settings().config.verbosity_level >= 2:
                    get_logger().exception(
                        f"Failed to publish code suggestion, "
                        f"relevant_lines_end is {relevant_lines_end} and "
                        f"relevant_lines_start is {relevant_lines_start}"
                    )
                continue
            if relevant_lines_end > relevant_lines_start:
                post_parameters = {
                    "body": body,
                    "path": relevant_file,
                    "line": relevant_lines_end,
                    "start_line": relevant_lines_start,
                    "start_side": "RIGHT",
                }
            else:  # API is different for single line comments
                post_parameters = {
                    "body": body,
                    "path": relevant_file,
                    "line": relevant_lines_start,
                    "side": "RIGHT",
                }
            post_parameters_list.append(post_parameters)
        try:
            self.publish_inline_comments(post_parameters_list)
            return True
        except Exception as e:
            if get_settings().config.verbosity_level >= 2:
                get_logger().error(f"Failed to publish code suggestion, error: {e}")
            return False
    def is_supported(self, capability: str) -> bool:
        if capability in ['get_issue_comments', 'get_labels', 'gfm_markdown']:
            return False
        return True
    def set_pr(self, pr_url: str):
        self.workspace_slug, self.repo_slug, self.pr_num = self._parse_pr_url(pr_url)
        self.pr = self._get_pr()
    def get_file(self, path: str, commit_id: str):
        file_content = ""
        try:
            file_content = self.bitbucket_client.get_content_of_file(self.workspace_slug,
                                                                     self.repo_slug,
                                                                     path,
                                                                     commit_id)
        except requests.HTTPError as e:
            get_logger().debug(f"File {path} not found at commit id: {commit_id}")
        return file_content
    def get_files(self):
        changes = self.bitbucket_client.get_pull_requests_changes(self.workspace_slug, self.repo_slug, self.pr_num)
        diffstat = [change["path"]['toString'] for change in changes]
        return diffstat
    def get_diff_files(self) -> list[FilePatchInfo]:
        if self.diff_files:
            return self.diff_files
        commits_in_pr = self.bitbucket_client.get_pull_requests_commits(
            self.workspace_slug,
            self.repo_slug,
            self.pr_num
        )
        commit_list = list(commits_in_pr)
        base_sha, head_sha = commit_list[0]['parents'][0]['id'], commit_list[-1]['id']
        diff_files = []
        original_file_content_str = ""
        new_file_content_str = ""
        changes = self.bitbucket_client.get_pull_requests_changes(self.workspace_slug, self.repo_slug, self.pr_num)
        for change in changes:
            file_path = change['path']['toString']
            match change['type']:
                case 'ADD':
                    edit_type = EDIT_TYPE.ADDED
                    new_file_content_str = self.get_file(file_path, head_sha)
                    if isinstance(new_file_content_str, (bytes, bytearray)):
                        new_file_content_str = new_file_content_str.decode("utf-8")
                    original_file_content_str = ""
                case 'DELETE':
                    edit_type = EDIT_TYPE.DELETED
                    new_file_content_str = ""
                    original_file_content_str = self.get_file(file_path, base_sha)
                    if isinstance(original_file_content_str, (bytes, bytearray)):
                        original_file_content_str = original_file_content_str.decode("utf-8")
                case 'RENAME':
                    edit_type = EDIT_TYPE.RENAMED
                case _:
                    edit_type = EDIT_TYPE.MODIFIED
                    original_file_content_str = self.get_file(file_path, base_sha)
                    if isinstance(original_file_content_str, (bytes, bytearray)):
                        original_file_content_str = original_file_content_str.decode("utf-8")
                    new_file_content_str = self.get_file(file_path, head_sha)
                    if isinstance(new_file_content_str, (bytes, bytearray)):
                        new_file_content_str = new_file_content_str.decode("utf-8")
            patch = load_large_diff(file_path, new_file_content_str, original_file_content_str)
            diff_files.append(
                FilePatchInfo(
                    original_file_content_str,
                    new_file_content_str,
                    patch,
                    file_path,
                    edit_type=edit_type,
                )
            )
        self.diff_files = diff_files
        return diff_files
    def publish_comment(self, pr_comment: str, is_temporary: bool = False):
        if not is_temporary:
            self.bitbucket_client.add_pull_request_comment(self.workspace_slug, self.repo_slug, self.pr_num, pr_comment)
    def remove_initial_comment(self):
        try:
            for comment in self.temp_comments:
                self.remove_comment(comment)
        except ValueError as e:
            get_logger().exception(f"Failed to remove temp comments, error: {e}")
    def remove_comment(self, comment):
        pass
    # funtion to create_inline_comment
    def create_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
        position, absolute_position = find_line_number_of_relevant_line_in_file(
            self.get_diff_files(),
            relevant_file.strip('`'),
            relevant_line_in_file
        )
        if position == -1:
            if get_settings().config.verbosity_level >= 2:
                get_logger().info(f"Could not find position for {relevant_file} {relevant_line_in_file}")
            subject_type = "FILE"
        else:
            subject_type = "LINE"
        path = relevant_file.strip()
        return dict(body=body, path=path, position=absolute_position) if subject_type == "LINE" else {}
    def publish_inline_comment(self, comment: str, from_line: int, file: str):
        payload = {
            "text": comment,
            "severity": "NORMAL",
            "anchor": {
                "diffType": "EFFECTIVE",
                "path": file,
                "lineType": "ADDED",
                "line": from_line,
                "fileType": "TO"
            }
        }
        response = requests.post(url=self._get_pr_comments_url(), json=payload, headers=self.headers)
        return response
    def generate_link_to_relevant_line_number(self, suggestion) -> str:
        try:
            relevant_file = suggestion['relevant file'].strip('`').strip("'")
            relevant_line_str = suggestion['relevant line']
            if not relevant_line_str:
                return ""
            diff_files = self.get_diff_files()
            position, absolute_position = find_line_number_of_relevant_line_in_file \
                (diff_files, relevant_file, relevant_line_str)
            if absolute_position != -1 and self.pr_url:
                link = f"{self.pr_url}/#L{relevant_file}T{absolute_position}"
                return link
        except Exception as e:
            if get_settings().config.verbosity_level >= 2:
                get_logger().info(f"Failed adding line link, error: {e}")
        return ""
    def publish_inline_comments(self, comments: list[dict]):
        for comment in comments:
            self.publish_inline_comment(comment['body'], comment['position'], comment['path'])
    def get_title(self):
        return self.pr.title
    def get_languages(self):
        return {"yaml": 0}  # devops LOL
    def get_pr_branch(self):
        return self.pr.fromRef['displayId']
    def get_pr_description_full(self):
        return self.pr.description
    def get_user_id(self):
        return 0
    def get_issue_comments(self):
        raise NotImplementedError(
            "Bitbucket provider does not support issue comments yet"
        )
    def add_eyes_reaction(self, issue_comment_id: int) -> Optional[int]:
        return True
    def remove_reaction(self, issue_comment_id: int, reaction_id: int) -> bool:
        return True
    @staticmethod
    def _parse_bitbucket_server(url: str) -> str:
        parsed_url = urlparse(url)
        return f"{parsed_url.scheme}://{parsed_url.netloc}"
    @staticmethod
    def _parse_pr_url(pr_url: str) -> Tuple[str, str, int]:
        parsed_url = urlparse(pr_url)
        path_parts = parsed_url.path.strip("/").split("/")
        if len(path_parts) < 6 or path_parts[4] != "pull-requests":
            raise ValueError(
                "The provided URL does not appear to be a Bitbucket PR URL"
            )
        workspace_slug = path_parts[1]
        repo_slug = path_parts[3]
        try:
            pr_number = int(path_parts[5])
        except ValueError as e:
            raise ValueError("Unable to convert PR number to integer") from e
        return workspace_slug, repo_slug, pr_number
    def _get_repo(self):
        if self.repo is None:
            self.repo = self.bitbucket_client.get_repo(self.workspace_slug, self.repo_slug)
        return self.repo
    def _get_pr(self):
        pr = self.bitbucket_client.get_pull_request(self.workspace_slug, self.repo_slug, pull_request_id=self.pr_num)
        return type('new_dict', (object,), pr)
    def _get_pr_file_content(self, remote_link: str):
        return ""
    def get_commit_messages(self):
        def get_commit_messages(self):
            raise NotImplementedError("Get commit messages function not implemented yet.")
    # bitbucket does not support labels
    def publish_description(self, pr_title: str, description: str):
        payload = json.dumps({
            "description": description,
            "title": pr_title
        })
        response = requests.put(url=self.bitbucket_pull_request_api_url, headers=self.headers, data=payload)
        return response
    # bitbucket does not support labels
    def publish_labels(self, pr_types: list):
        pass
    # bitbucket does not support labels
    def get_labels(self):
        pass
    def _get_pr_comments_url(self):
        return f"{self.bitbucket_server_url}/rest/api/latest/projects/{self.workspace_slug}/repos/{self.repo_slug}/pull-requests/{self.pr_num}/comments"
--- a/pr_agent/git_providers/codecommit_provider.py
+++ b/pr_agent/git_providers/codecommit_provider.py
@ -6,9 +6,9 @@ from urllib.parse import urlparse
 from pr_agent.git_providers.codecommit_client import CodeCommitClient
 from ..algo.language_handler import is_valid_file, language_extension_map
 from ..algo.utils import load_large_diff
 from .git_provider import EDIT_TYPE, FilePatchInfo, GitProvider
 from ..config_loader import get_settings
 from ..log import get_logger
@ -269,8 +269,6 @@ class CodeCommitProvider(GitProvider):
        # where each dictionary item is a language name.
        # We build that language->extension dictionary here in main_extensions_flat.
        main_extensions_flat = {}
        language_extension_map_org = get_settings().language_extension_map_org
        language_extension_map = {k.lower(): v for k, v in language_extension_map_org.items()}
        for language, extensions in language_extension_map.items():
            for ext in extensions:
                main_extensions_flat[ext] = language
--- a/pr_agent/git_providers/git_provider.py
+++ b/pr_agent/git_providers/git_provider.py
@ -5,7 +5,6 @@ from dataclasses import dataclass
 from enum import Enum
 from typing import Optional
 from pr_agent.config_loader import get_settings
 from pr_agent.log import get_logger
@ -41,10 +40,45 @@ class GitProvider(ABC):
    def publish_description(self, pr_title: str, pr_body: str):
        pass
    @abstractmethod
    def publish_comment(self, pr_comment: str, is_temporary: bool = False):
        pass
    def publish_persistent_comment(self, pr_comment: str, initial_text: str, updated_text: str):
        self.publish_comment(pr_comment)
    @abstractmethod
    def publish_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
        pass
    @abstractmethod
    def create_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
        pass
    @abstractmethod
    def publish_inline_comments(self, comments: list[dict]):
        pass
    @abstractmethod
    def publish_code_suggestions(self, code_suggestions: list) -> bool:
        pass
    @abstractmethod
    def publish_labels(self, labels):
        pass
    @abstractmethod
    def get_labels(self):
        pass
    @abstractmethod
    def remove_initial_comment(self):
        pass
    @abstractmethod
    def remove_comment(self, comment):
        pass
    @abstractmethod
    def get_languages(self):
        pass
@ -63,7 +97,7 @@ class GitProvider(ABC):
    def get_pr_description(self, *, full: bool = True) -> str:
        from pr_agent.config_loader import get_settings
-        from pr_agent.algo.utils import clip_tokens
+        from pr_agent.algo.pr_processing import clip_tokens
        max_tokens_description = get_settings().get("CONFIG.MAX_DESCRIPTION_TOKENS", None)
        description = self.get_pr_description_full() if full else self.get_user_description()
        if max_tokens_description:
@ -82,58 +116,12 @@ class GitProvider(ABC):
        # otherwise, extract the original user description from the existing pr-agent description and return it
        return description.split("## User Description:", 1)[1].strip()
    @abstractmethod
    def get_repo_settings(self):
        pass
    def get_pr_id(self):
        return ""
    def get_line_link(self, relevant_file: str, relevant_line_start: int, relevant_line_end: int = None) -> str:
        return ""
    #### comments operations ####
    @abstractmethod
    def publish_comment(self, pr_comment: str, is_temporary: bool = False):
        pass
    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool):
        self.publish_comment(pr_comment)
    @abstractmethod
    def publish_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
        pass
    @abstractmethod
    def create_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
        pass
    @abstractmethod
    def publish_inline_comments(self, comments: list[dict]):
        pass
    @abstractmethod
    def remove_initial_comment(self):
        pass
    @abstractmethod
    def remove_comment(self, comment):
        pass
    @abstractmethod
    def get_issue_comments(self):
        pass
    def get_comment_url(self, comment) -> str:
        return ""
    #### labels operations ####
    @abstractmethod
-    def publish_labels(self, labels):
+    def get_repo_settings(self):
        pass
    @abstractmethod
    def get_labels(self):
        pass
    @abstractmethod
@ -144,12 +132,11 @@ class GitProvider(ABC):
    def remove_reaction(self, issue_comment_id: int, reaction_id: int) -> bool:
        pass
    #### commits operations ####
    @abstractmethod
    def get_commit_messages(self):
        pass
-    def get_latest_commit_url(self) -> str:
+    def get_pr_id(self):
        return ""
 def get_main_pr_language(languages, files) -> str:
@ -177,42 +164,26 @@ def get_main_pr_language(languages, files) -> str:
            extension_list.append(file.filename.rsplit('.')[-1])
        # get the most common extension
-        most_common_extension = '.' + max(set(extension_list), key=extension_list.count)
+        most_common_extension = max(set(extension_list), key=extension_list.count)
        try:
            language_extension_map_org = get_settings().language_extension_map_org
            language_extension_map = {k.lower(): v for k, v in language_extension_map_org.items()}
-            if top_language in language_extension_map and most_common_extension in language_extension_map[top_language]:
+        # look for a match. TBD: add more languages, do this systematically
-                main_language_str = top_language
+        if most_common_extension == 'py' and top_language == 'python' or \
-            else:
+                most_common_extension == 'js' and top_language == 'javascript' or \
-                for language, extensions in language_extension_map.items():
+                most_common_extension == 'ts' and top_language == 'typescript' or \
-                    if most_common_extension in extensions:
+                most_common_extension == 'go' and top_language == 'go' or \
-                        main_language_str = language
+                most_common_extension == 'java' and top_language == 'java' or \
-                        break
+                most_common_extension == 'c' and top_language == 'c' or \
-        except Exception as e:
+                most_common_extension == 'cpp' and top_language == 'c++' or \
-            get_logger().exception(f"Failed to get main language: {e}")
+                most_common_extension == 'cs' and top_language == 'c#' or \
-            pass
+                most_common_extension == 'swift' and top_language == 'swift' or \
-
+                most_common_extension == 'php' and top_language == 'php' or \
-        ## old approach:
+                most_common_extension == 'rb' and top_language == 'ruby' or \
-        # most_common_extension = max(set(extension_list), key=extension_list.count)
+                most_common_extension == 'rs' and top_language == 'rust' or \
-        # if most_common_extension == 'py' and top_language == 'python' or \
+                most_common_extension == 'scala' and top_language == 'scala' or \
-        #         most_common_extension == 'js' and top_language == 'javascript' or \
+                most_common_extension == 'kt' and top_language == 'kotlin' or \
-        #         most_common_extension == 'ts' and top_language == 'typescript' or \
+                most_common_extension == 'pl' and top_language == 'perl' or \
-        #         most_common_extension == 'tsx' and top_language == 'typescript' or \
+                most_common_extension == top_language:
-        #         most_common_extension == 'go' and top_language == 'go' or \
+            main_language_str = top_language
        #         most_common_extension == 'java' and top_language == 'java' or \
        #         most_common_extension == 'c' and top_language == 'c' or \
        #         most_common_extension == 'cpp' and top_language == 'c++' or \
        #         most_common_extension == 'cs' and top_language == 'c#' or \
        #         most_common_extension == 'swift' and top_language == 'swift' or \
        #         most_common_extension == 'php' and top_language == 'php' or \
        #         most_common_extension == 'rb' and top_language == 'ruby' or \
        #         most_common_extension == 'rs' and top_language == 'rust' or \
        #         most_common_extension == 'scala' and top_language == 'scala' or \
        #         most_common_extension == 'kt' and top_language == 'kotlin' or \
        #         most_common_extension == 'pl' and top_language == 'perl' or \
        #         most_common_extension == top_language:
        #     main_language_str = top_language
    except Exception as e:
        get_logger().exception(e)
--- a/pr_agent/git_providers/github_provider.py
+++ b/pr_agent/git_providers/github_provider.py
@ -8,8 +8,8 @@ from retry import retry
 from starlette_context import context
 from ..algo.language_handler import is_valid_file
-from ..algo.pr_processing import find_line_number_of_relevant_line_in_file
+from ..algo.pr_processing import clip_tokens, find_line_number_of_relevant_line_in_file
-from ..algo.utils import load_large_diff, clip_tokens
+from ..algo.utils import load_large_diff
 from ..config_loader import get_settings
 from ..log import get_logger
 from ..servers.utils import RateLimitExceeded
@ -154,28 +154,16 @@ class GithubProvider(GitProvider):
    def publish_description(self, pr_title: str, pr_body: str):
        self.pr.edit(title=pr_title, body=pr_body)
-    def get_latest_commit_url(self) -> str:
+    def publish_persistent_comment(self, pr_comment: str, initial_text: str, updated_text: str):
        return self.last_commit_id.html_url
    def get_comment_url(self, comment) -> str:
        return comment.html_url
    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool = True):
        prev_comments = list(self.pr.get_issue_comments())
        for comment in prev_comments:
            body = comment.body
-            if body.startswith(initial_header):
+            if body.startswith(initial_text):
-                latest_commit_url = self.get_latest_commit_url()
+                if updated_text:
-                comment_url = self.get_comment_url(comment)
+                    pr_comment_updated = pr_comment.replace(initial_text, updated_text)
                if update_header:
                    updated_header = f"{initial_header}\n\n### (review updated until commit {latest_commit_url})\n"
                    pr_comment_updated = pr_comment.replace(initial_header, updated_header)
                else:
                    pr_comment_updated = pr_comment
                get_logger().info(f"Persistent mode- updating comment {comment_url} to latest review message")
                response = comment.edit(pr_comment_updated)
                self.publish_comment(
                    f"**[Persistent review]({comment_url})** updated to latest commit {latest_commit_url}")
                return
        self.publish_comment(pr_comment)
@ -405,7 +393,7 @@ class GithubProvider(GitProvider):
                raise ValueError("GitHub app installation ID is required when using GitHub app deployment")
            auth = AppAuthentication(app_id=app_id, private_key=private_key,
                                     installation_id=self.installation_id)
-            return Github(app_auth=auth, base_url=get_settings().github.base_url)
+            return Github(app_auth=auth)
        if deployment_type == 'user':
            try:
@ -414,7 +402,7 @@ class GithubProvider(GitProvider):
                raise ValueError(
                    "GitHub token is required when using user deployment. See: "
                    "https://github.com/Codium-ai/pr-agent#method-2-run-from-source") from e
-            return Github(auth=Auth.Token(token), base_url=get_settings().github.base_url)
+            return Github(auth=Auth.Token(token))
    def _get_repo(self):
        if hasattr(self, 'repo_obj') and \
@ -501,15 +489,6 @@ class GithubProvider(GitProvider):
        return ""
    def get_line_link(self, relevant_file: str, relevant_line_start: int, relevant_line_end: int = None) -> str:
        sha_file = hashlib.sha256(relevant_file.encode('utf-8')).hexdigest()
        if relevant_line_end:
            link = f"https://github.com/{self.repo}/pull/{self.pr_num}/files#diff-{sha_file}R{relevant_line_start}-R{relevant_line_end}"
        else:
            link = f"https://github.com/{self.repo}/pull/{self.pr_num}/files#diff-{sha_file}R{relevant_line_start}"
        return link
    def get_pr_id(self):
        try:
            pr_id = f"{self.repo}/{self.pr_num}"
--- a/pr_agent/git_providers/gitlab_provider.py
+++ b/pr_agent/git_providers/gitlab_provider.py
@ -7,8 +7,8 @@ import gitlab
 from gitlab import GitlabGetError
 from ..algo.language_handler import is_valid_file
-from ..algo.pr_processing import find_line_number_of_relevant_line_in_file
+from ..algo.pr_processing import clip_tokens, find_line_number_of_relevant_line_in_file
-from ..algo.utils import load_large_diff, clip_tokens
+from ..algo.utils import load_large_diff
 from ..config_loader import get_settings
 from .git_provider import EDIT_TYPE, FilePatchInfo, GitProvider
 from ..log import get_logger
@ -43,7 +43,7 @@ class GitLabProvider(GitProvider):
        self.incremental = incremental
    def is_supported(self, capability: str) -> bool:
-        if capability in ['get_issue_comments', 'create_inline_comment', 'publish_inline_comments']: # gfm_markdown is supported in gitlab !
+        if capability in ['get_issue_comments', 'create_inline_comment', 'publish_inline_comments', 'gfm_markdown']:
            return False
        return True
@ -136,27 +136,15 @@ class GitLabProvider(GitProvider):
        except Exception as e:
            get_logger().exception(f"Could not update merge request {self.id_mr} description: {e}")
-    def get_latest_commit_url(self):
+    def publish_persistent_comment(self, pr_comment: str, initial_text: str, updated_text: str):
        return self.mr.commits().next().web_url
    def get_comment_url(self, comment):
        return f"{self.mr.web_url}#note_{comment.id}"
    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool = True):
        try:
            for comment in self.mr.notes.list(get_all=True)[::-1]:
-                if comment.body.startswith(initial_header):
+                if comment.body.startswith(initial_text):
-                    latest_commit_url = self.get_latest_commit_url()
+                    if updated_text:
-                    comment_url = self.get_comment_url(comment)
+                        pr_comment_updated = pr_comment.replace(initial_text, updated_text)
                    if update_header:
                        updated_header = f"{initial_header}\n\n### (review updated until commit {latest_commit_url})\n"
                        pr_comment_updated = pr_comment.replace(initial_header, updated_header)
                    else:
                        pr_comment_updated = pr_comment
                    get_logger().info(f"Persistent mode- updating comment {comment_url} to latest review message")
                    response = self.mr.notes.update(comment.id, {'body': pr_comment_updated})
                    self.publish_comment(
                        f"**[Persistent review]({comment_url})** updated to latest commit {latest_commit_url}")
                    return
        except Exception as e:
            get_logger().exception(f"Failed to update persistent review, error: {e}")
@ -422,14 +410,6 @@ class GitLabProvider(GitProvider):
        except:
            return ""
    def get_line_link(self, relevant_file: str, relevant_line_start: int, relevant_line_end: int = None) -> str:
        if relevant_line_end:
            link = f"https://gitlab.com/codiumai/pr-agent/-/blob/{self.mr.source_branch}/{relevant_file}?ref_type=heads#L{relevant_line_start}-L{relevant_line_end}"
        else:
            link = f"https://gitlab.com/codiumai/pr-agent/-/blob/{self.mr.source_branch}/{relevant_file}?ref_type=heads#L{relevant_line_start}"
        return link
    def generate_link_to_relevant_line_number(self, suggestion) -> str:
        try:
            relevant_file = suggestion['relevant file'].strip('`').strip("'")
--- a/pr_agent/servers/bitbucket_server_webhook.py
+++ b/pr_agent/servers/bitbucket_server_webhook.py
@ -1,64 +0,0 @@
 import json
 import uvicorn
 from fastapi import APIRouter, FastAPI
 from fastapi.encoders import jsonable_encoder
 from starlette import status
 from starlette.background import BackgroundTasks
 from starlette.middleware import Middleware
 from starlette.requests import Request
 from starlette.responses import JSONResponse
 from starlette_context.middleware import RawContextMiddleware
 from pr_agent.agent.pr_agent import PRAgent
 from pr_agent.config_loader import get_settings
 from pr_agent.log import get_logger
 router = APIRouter()
 def handle_request(background_tasks: BackgroundTasks, url: str, body: str, log_context: dict):
    log_context["action"] = body
    log_context["event"] = "pull_request" if body == "review" else "comment"
    log_context["api_url"] = url
    with get_logger().contextualize(**log_context):
        background_tasks.add_task(PRAgent().handle_request, url, body)
@router.post("/webhook")
 async def handle_webhook(background_tasks: BackgroundTasks, request: Request):
    log_context = {"server_type": "bitbucket_server"}
    data = await request.json()
    get_logger().info(json.dumps(data))
    pr_id = data['pullRequest']['id']
    repository_name = data['pullRequest']['toRef']['repository']['slug']
    project_name = data['pullRequest']['toRef']['repository']['project']['key']
    bitbucket_server = get_settings().get("BITBUCKET_SERVER.URL")
    pr_url = f"{bitbucket_server}/projects/{project_name}/repos/{repository_name}/pull-requests/{pr_id}"
    log_context["api_url"] = pr_url
    log_context["event"] = "pull_request"
    handle_request(background_tasks, pr_url, "review", log_context)
    return JSONResponse(status_code=status.HTTP_200_OK, content=jsonable_encoder({"message": "success"}))
@router.get("/")
 async def root():
    return {"status": "ok"}
 def start():
    bitbucket_server_url = get_settings().get("BITBUCKET_SERVER.URL", None)
    if not bitbucket_server_url:
        raise ValueError("BITBUCKET_SERVER.URL is not set")
    get_settings().config.git_provider = "bitbucket_server"
    middleware = [Middleware(RawContextMiddleware)]
    app = FastAPI(middleware=middleware)
    app.include_router(router)
    uvicorn.run(app, host="0.0.0.0", port=3000)
 if __name__ == '__main__':
    start()
--- a/pr_agent/servers/github_action_runner.py
+++ b/pr_agent/servers/github_action_runner.py
@ -1,7 +1,6 @@
 import asyncio
 import json
 import os
 from typing import Union
 from pr_agent.agent.pr_agent import PRAgent
 from pr_agent.config_loader import get_settings
@ -13,22 +12,6 @@ from pr_agent.tools.pr_description import PRDescription
 from pr_agent.tools.pr_reviewer import PRReviewer
 def is_true(value: Union[str, bool]) -> bool:
    if isinstance(value, bool):
        return value
    if isinstance(value, str):
        return value.lower() == 'true'
    return False
 def get_setting_or_env(key: str, default: Union[str, bool] = None) -> Union[str, bool]:
    try:
        value = get_settings().get(key, default)
    except AttributeError:  # TBD still need to debug why this happens on GitHub Actions
        value = os.getenv(key, None) or os.getenv(key.upper(), None) or os.getenv(key.lower(), None) or default
    return value
 async def run_action():
    # Get environment variables
    GITHUB_EVENT_NAME = os.environ.get('GITHUB_EVENT_NAME')
@ -82,14 +65,14 @@ async def run_action():
        if action in ["opened", "reopened"]:
            pr_url = event_payload.get("pull_request", {}).get("url")
            if pr_url:
-                auto_review = get_setting_or_env("GITHUB_ACTION.AUTO_REVIEW", None)
+                auto_review = os.environ.get('github_action.auto_review', None)
-                if auto_review is None or is_true(auto_review):
+                if auto_review is None or (isinstance(auto_review, str) and auto_review.lower() == 'true'):
                    await PRReviewer(pr_url).run()
-                auto_describe = get_setting_or_env("GITHUB_ACTION.AUTO_DESCRIBE", None)
+                auto_describe = os.environ.get('github_action.auto_describe', None)
-                if is_true(auto_describe):
+                if isinstance(auto_describe, str) and auto_describe.lower() == 'true':
                    await PRDescription(pr_url).run()
-                auto_improve = get_setting_or_env("GITHUB_ACTION.AUTO_IMPROVE", None)
+                auto_improve = os.environ.get('github_action.auto_improve', None)
-                if is_true(auto_improve):
+                if isinstance(auto_improve, str) and auto_improve.lower() == 'true':
                    await PRCodeSuggestions(pr_url).run()
    # Handle issue comment event
@ -116,4 +99,4 @@ async def run_action():
 if __name__ == '__main__':
-    asyncio.run(run_action())
+    asyncio.run(run_action())
--- a/pr_agent/servers/gitlab_webhook.py
+++ b/pr_agent/servers/gitlab_webhook.py
@ -38,7 +38,7 @@ async def gitlab_webhook(background_tasks: BackgroundTasks, request: Request):
        try:
            secret_dict = json.loads(secret)
            gitlab_token = secret_dict["gitlab_token"]
-            log_context["sender"] = secret_dict.get("token_name", secret_dict.get("id", "unknown"))
+            log_context["sender"] = secret_dict["id"]
            context["settings"] = copy.deepcopy(global_settings)
            context["settings"].gitlab.personal_access_token = gitlab_token
        except Exception as e:
--- a/pr_agent/servers/help.py
+++ b/pr_agent/servers/help.py
@ -1,14 +1,12 @@
-commands_text = "> **/review**: Request a review of your Pull Request.\n" \
+commands_text = "> **/review [-i]**: Request a review of your Pull Request. For an incremental review, which only " \
-                "> **/describe**: Update the PR title and description based on the contents of the PR.\n" \
+                "considers changes since the last review, include the '-i' option.\n" \
-                "> **/improve [--extended]**: Suggest code improvements. Extended mode provides a higher quality feedback.\n" \
+                "> **/describe**: Modify the PR title and description based on the contents of the PR.\n" \
-                "> **/ask \\<QUESTION\\>**: Ask a question about the PR.\n" \
+                "> **/improve [--extended]**: Suggest improvements to the code in the PR. Extended mode employs several calls, and provides a more thorough feedback. \n" \
-                "> **/update_changelog**: Update the changelog based on the PR's contents.\n" \
+                "> **/ask \\<QUESTION\\>**: Pose a question about the PR.\n" \
-                "> **/add_docs**: Generate docstring for new components introduced in the PR.\n" \
+                "> **/update_changelog**: Update the changelog based on the PR's contents.\n\n" \
-                "> **/generate_labels**: Generate labels for the PR based on the PR's contents.\n" \
+                ">To edit any configuration parameter from **configuration.toml**, add --config_path=new_value\n" \
                "> see the [tools guide](https://github.com/Codium-ai/pr-agent/blob/main/docs/TOOLS_GUIDE.md) for more details.\n\n" \
                ">To edit any configuration parameter from the [configuration.toml](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/settings/configuration.toml), add --config_path=new_value.\n" \
                ">For example: /review --pr_reviewer.extra_instructions=\"focus on the file: ...\" \n" \
-                ">To list the possible configuration parameters, add a **/config** comment.\n" \
+                ">To list the possible configuration parameters, use the **/config** command.\n" \
 def bot_help_text(user: str):
--- a/pr_agent/servers/serverless.py
+++ b/pr_agent/servers/serverless.py
@ -3,8 +3,10 @@ from mangum import Mangum
 from starlette.middleware import Middleware
 from starlette_context.middleware import RawContextMiddleware
 from pr_agent.log import setup_logger
 from pr_agent.servers.github_app import router
 setup_logger()
 middleware = [Middleware(RawContextMiddleware)]
 app = FastAPI(middleware=middleware)
--- a/pr_agent/settings/.secrets_template.toml
+++ b/pr_agent/settings/.secrets_template.toml
@ -36,10 +36,6 @@ api_base = "" # the base url for your huggingface inference endpoint
 [ollama]
 api_base = "" # the base url for your local Llama 2, Code Llama, and other models inference endpoint. Acquire through https://ollama.ai/
 [vertexai]
 vertex_project = "" # the google cloud platform project name for your vertexai deployment
 vertex_location = "" # the google cloud platform location for your vertexai deployment
 [github]
 # ---- Set the following only for deployment type == "user"
 user_token = ""  # A GitHub personal access token with 'repo' scope.
--- a/pr_agent/settings/configuration.toml
+++ b/pr_agent/settings/configuration.toml
@ -4,7 +4,7 @@ fallback_models=["gpt-3.5-turbo-16k"]
 git_provider="github"
 publish_output=true
 publish_output_progress=true
-verbosity_level=0 # 0,1,2
+verbosity_level=2 # 0,1,2
 use_extra_bad_extensions=false
 use_repo_settings_file=true
 ai_timeout=180
@ -16,13 +16,11 @@ secret_provider="google_cloud_storage"
 cli_mode=false
 [pr_reviewer] # /review #
 # enable/disable features
 require_focused_review=false
 require_score_review=false
 require_tests_review=true
 require_security_review=true
 require_estimate_effort_to_review=true
 # general options
 num_code_suggestions=4
 inline_code_comments = false
 ask_and_reflect=false
@ -30,9 +28,6 @@ automatic_review=true
 remove_previous_review_comment=false
 persistent_comment=true
 extra_instructions = ""
 # review labels
 enable_review_labels_security=true
 enable_review_labels_effort=false
 # specific configurations for incremental review (/review -i)
 require_all_thresholds_for_incremental_review=false
 minimal_commits_for_incremental_review=0
@ -57,7 +52,6 @@ include_generated_by_header=true
 [pr_code_suggestions] # /improve #
 num_code_suggestions=4
 summarize = false
 extra_instructions = ""
 rank_suggestions = false
 # params for '/improve --extended' mode
@ -80,7 +74,6 @@ extra_instructions = ""
 # The type of deployment to create. Valid values are 'app' or 'user'.
 deployment_type = "user"
 ratelimit_retries = 5
 base_url = "https://api.github.com"
 [github_action]
 # auto_review = true    # set as env var in .github/workflows/pr-agent.yaml
--- a/pr_agent/settings/custom_labels.toml
+++ b/pr_agent/settings/custom_labels.toml
@ -3,16 +3,16 @@ enable_custom_labels=false
 ## template for custom labels
 #[custom_labels."Bug fix"]
-#description = """Fixes a bug in the code"""
+#description = "Fixes a bug in the code"
 #[custom_labels."Tests"]
-#description = """Adds or modifies tests"""
+#description = "Adds or modifies tests"
 #[custom_labels."Bug fix with tests"]
-#description = """Fixes a bug in the code and adds or modifies tests"""
+#description = "Fixes a bug in the code and adds or modifies tests"
 #[custom_labels."Refactoring"]
-#description = """Code refactoring without changing functionality"""
+#description = "Code refactoring without changing functionality"
 #[custom_labels."Enhancement"]
-#description = """Adds new features or functionality"""
+#description = "Adds new features or functionality"
 #[custom_labels."Documentation"]
-#description = """Adds or modifies documentation"""
+#description = "Adds or modifies documentation"
 #[custom_labels."Other"]
-#description = """Other changes that do not fit in any of the above categories"""
+#description = "Other changes that do not fit in any of the above categories"
--- a/pr_agent/settings/pr_add_docs.toml
+++ b/pr_agent/settings/pr_add_docs.toml
@ -1,6 +1,6 @@
 [pr_add_docs_prompt]
 system="""You are a language model called PR-Code-Documentation Agent, that specializes in generating documentation for code.
-Your task is to generate meaningfull {{ docs_for_language }} to a PR (lines starting with '+').
+Your task is to generate meaningfull {{ docs_for_language }} to a PR (the '+' lines).
 Example for a PR Diff input:
 '
@ -103,7 +103,7 @@ Description: '{{description}}'
 {%- if language %}
-Main PR language: '{{language}}'
+Main language: {{language}}
 {%- endif %}
--- a/pr_agent/settings/pr_code_suggestions_prompts.toml
+++ b/pr_agent/settings/pr_code_suggestions_prompts.toml
@ -1,6 +1,6 @@
 [pr_code_suggestions_prompt]
-system="""You are PR-Reviewer, a language model that specializes in suggesting code improvements for a Pull Request (PR).
+system="""You are a language model called PR-Code-Reviewer, that specializes in suggesting code improvements for Pull Request (PR).
-Your task is to provide meaningful and actionable code suggestions, to improve the new code presented in a PR diff (lines starting with '+').
+Your task is to provide meaningful and actionable code suggestions, to improve the new code presented in a PR (the '+' lines in the diff).
 Example for a PR Diff input:
 '
@ -90,19 +90,16 @@ Code suggestions:
 Example output:
 ```yaml
 Code suggestions:
- relevant file: |-
+  - relevant file: |-
-    src/file1.py
+        src/file1.py
-  suggestion content: |-
+    suggestion content: |-
-    Add a docstring to func1()
+        Add a docstring to func1()
-  existing code: |-
+    existing code: |-
-    def func1():
+        def func1():
-  relevant lines start: |-
+    relevant lines start: 12
-    12
+    relevant lines end: 12
-  relevant lines end: |-
+    improved code: |-
-    12
+        ...
  improved code: |-
    ...
 ...
 ```
@ -120,7 +117,7 @@ Description: '{{description}}'
 {%- if language %}
-Main PR language: '{{ language }}'
+Main language: {{language}}
 {%- endif %}
--- a/pr_agent/settings/pr_custom_labels.toml
+++ b/pr_agent/settings/pr_custom_labels.toml
@ -1,10 +1,8 @@
 [pr_custom_labels_prompt]
-system="""You are PR-Reviewer, a language model designed to review a git Pull Request (PR).
+system="""You are CodiumAI-PR-Reviewer, a language model designed to review git pull requests.
-Your task is to provide labels that describe the PR content.
+Your task is to label the type of the PR content.
-{%- if enable_custom_labels %}
+- Make sure not to focus the new PR code (the '+' lines).
-Thoroughly read the labels name and the provided description, and decide whether the label is relevant to the PR.
+- If needed, each YAML output should be in block scalar format ('|-')
 {%- endif %}
 {%- if extra_instructions %}
 Extra instructions from the user:
@ -13,56 +11,52 @@ Extra instructions from the user:
 '
 {% endif %}
-
+You must use the following YAML schema to format your answer:
-The output must be a YAML object equivalent to type $Labels, according to the following Pydantic definitions:
+```yaml
-'
+PR Type:
  type: array
 {%- if enable_custom_labels %}
-
+  description: Labels that are applicable to the Pull Request. Don't output the description in the parentheses. If none of the labels is relevant to the PR, output an empty array.
-{{ custom_labels_class }}
+{%- endif %}
-
+  items:
-{%- else %}
+    type: string
-class Label(str, Enum):
+    enum:
-    bug_fix = "Bug fix"
+{%- if enable_custom_labels %}
-    tests = "Tests"
+{{ custom_labels }}
-    refactoring = "Refactoring"
+{%- else %}
-    enhancement = "Enhancement"
+      - Bug fix
-    documentation = "Documentation"
+      - Tests
-    other = "Other"
+      - Refactoring
      - Enhancement
      - Documentation
      - Other
 {%- endif %}
 class Labels(BaseModel):
    labels: List[Label] = Field(min_items=0, description="custom labels that describe the PR. Return the label value, not the name.")
 '
 Example output:
 ```yaml
-labels:
+PR Type:
- ...
+{%- if enable_custom_labels %}
- ...
+{{ custom_labels_examples }}
 {%- else %}
  - Bug fix
 {%- endif %}
 ```
-Answer should be a valid YAML, and nothing else.
+Make sure to output a valid YAML. Don't repeat the prompt in the answer, and avoid outputting the 'type' and 'description' fields.
 """
 user="""PR Info:
 Previous title: '{{title}}'
-
+Previous description: '{{description}}'
-Branch: '{{ branch }}'
+Branch: '{{branch}}'
 Description: '{{ description }}'
 {%- if language %}
-Main PR language: '{{ language }}'
+Main language: {{language}}
 {%- endif %}
 {%- if commit_messages_str %}
 Commit messages:
-'
+{{commit_messages_str}}
 {{ commit_messages_str }}
 '
 {%- endif %}
--- a/pr_agent/settings/pr_description_prompts.toml
+++ b/pr_agent/settings/pr_description_prompts.toml
@ -1,9 +1,9 @@
 [pr_description_prompt]
-system="""You are PR-Reviewer, a language model designed to review a git Pull Request (PR).
+system="""You are CodiumAI-PR-Reviewer, a language model designed to review git pull requests.
-Your task is to provide a full description for the PR content.
+Your task is to provide full description of a Pull Request (PR) content.
- Make sure to focus on the new PR code (lines starting with '+').
+- Make sure to focus on the new PR code (the '+' lines).
- Keep in mind that the 'Previous title', 'Previous description' and 'Commit messages' sections may be partial, simplistic, non-informative or out of date. Hence, compare them to the PR diff code, and use them only as a reference.
+- Notice that the 'Previous title', 'Previous description' and 'Commit messages' sections may be partial, simplistic, non-informative or not up-to-date. Hence, compare them to the PR diff code, and use them only as a reference.
- Prioritize the most significant PR changes first, followed by the minor ones.
+- Emphasize first the most important changes, and then the less important ones.
 - If needed, each YAML output should be in block scalar format ('|-')
 {%- if extra_instructions %}
@ -13,83 +13,81 @@ Extra instructions from the user:
 '
 {% endif %}
-
+You must use the following YAML schema to format your answer:
-The output must be a YAML object equivalent to type $PRDescription, according to the following Pydantic definitions:
+```yaml
-'
+PR Title:
-class PRType(str, Enum):
+  type: string
-    bug_fix = "Bug fix"
+  description: an informative title for the PR, describing its main theme
-    tests = "Tests"
+PR Type:
-    refactoring = "Refactoring"
+  type: string
-    enhancement = "Enhancement"
+  enum:
-    documentation = "Documentation"
+    - Bug fix
-    other = "Other"
+    - Tests
-
+    - Refactoring
    - Enhancement
    - Documentation
    - Other
 {%- if enable_custom_labels %}
-
+PR Labels:
-{{ custom_labels_class }}
+  type: array
-
+  description: Labels that are applicable to the Pull Request. Don't output the description in the parentheses. If none of the labels is relevant to the PR, output an empty array.
  items:
    type: string
    enum:
 {{ custom_labels }}
 {%- endif %}
-
+PR Description:
-class FileWalkthrough(BaseModel):
+  type: string
-    filename: str = Field(description="the relevant file full path")
+  description: an informative and concise description of the PR.
-    changes_in_file: str = Field(description="minimal and concise description of the changes in the relevant file")
+  {%- if use_bullet_points %} Use bullet points. {% endif %}
-
+PR Main Files Walkthrough:
-Class PRDescription(BaseModel):
+  type: array
-    title: str = Field(description="an informative title for the PR, describing its main theme")
+  maxItems: 10
-    type: List[PRType] = Field(description="one or more types that describe the PR type. . Return the label value, not the name.")
+  description: |-
-    description: str = Field(description="an informative and concise description of the PR. {%- if use_bullet_points %} Use bullet points. {% endif %}")
+    a walkthrough of the PR changes. Review main files, and shortly describe the changes in each file (up to 10 most important files).
-{%- if enable_custom_labels %}
+  items:
-    labels: List[Label] = Field(min_items=0, description="custom labels that describe the PR. Return the label value, not the name.")
+    filename:
-{%- endif %}
+      type: string
-    main_files_walkthrough: List[FileWalkthrough] = Field(max_items=10)
+      description: the relevant file full path
-'
+    changes in file:
      type: string
      description: minimal and concise description of the changes in the relevant file
 ```
 Example output:
 ```yaml
-title: |-
+PR Title: |-
  ...
 PR Type:
  ...
 type:
 - ...
 - ...
 {%- if enable_custom_labels %}
-labels:
+PR Labels:
 - ...
 - ...
 {%- endif %}
-description: |-
+PR Description: |-
  ...
-main_files_walkthrough:
+PR Main Files Walkthrough:
- ...
+  - ...
- ...
+  - ...
 ```
-Answer should be a valid YAML, and nothing else. Each YAML output MUST be after a newline, with proper indent, and block scalar indicator ('|-')
+Make sure to output a valid YAML. Don't repeat the prompt in the answer, and avoid outputting the 'type' and 'description' fields.
 """
 user="""PR Info:
 Previous title: '{{title}}'
-
+Previous description: '{{description}}'
 {%- if description %}
 Previous description:
 '
 {{ description }}
 '
 {%- endif %}
 Branch: '{{branch}}'
 {%- if language %}
-Main PR language: '{{ language }}'
+Main language: {{language}}
 {%- endif %}
 {%- if commit_messages_str %}
 Commit messages:
-'
+{{commit_messages_str}}
 {{ commit_messages_str }}
 '
 {%- endif %}
@ -97,8 +95,6 @@ The PR Git Diff:
 ```
 {{diff}}
 ```
 Note that lines in the diff body are prefixed with a symbol that represents the type of change: '-' for deletions, '+' for additions, and ' ' (a space) for unchanged lines.
 Response (should be a valid YAML, and nothing else):
--- a/pr_agent/settings/pr_information_from_user_prompts.toml
+++ b/pr_agent/settings/pr_information_from_user_prompts.toml
@ -1,5 +1,5 @@
 [pr_information_from_user_prompt]
-system="""You are PR-Reviewer, a language model designed to review a git Pull Request (PR).
+system="""You are CodiumAI-PR-Reviewer, a language model designed to review git pull requests.
 Given the PR Info and the PR Git Diff, generate 3 short questions about the PR code for the PR author.
 The goal of the questions is to help the language model understand the PR better, so the questions should be insightful, informative, non-trivial, and relevant to the PR.
 You should prefer asking yes\\no questions, or multiple choice questions. Also add at least one open-ended question, but make sure they are not too difficult, and can be answered in a sentence or two.
@ -16,21 +16,15 @@ Questions to better understand the PR:
 user="""PR Info:
 Title: '{{title}}'
 Branch: '{{branch}}'
 Description: '{{description}}'
 {%- if language %}
-
+Main language: {{language}}
 Main PR language: '{{ language }}'
 {%- endif %}
 {%- if commit_messages_str %}
 Commit messages:
 '
 {{commit_messages_str}}
 '
 {%- endif %}
--- a/pr_agent/settings/pr_questions_prompts.toml
+++ b/pr_agent/settings/pr_questions_prompts.toml
@ -1,29 +1,22 @@
 [pr_questions_prompt]
-system="""You are PR-Reviewer, a language model designed to review a git Pull Request (PR).
+system="""You are CodiumAI-PR-Reviewer, a language model designed to review git pull requests.
-Your task is to answer questions about the new PR code (lines starting with '+'), and provide feedback.
+Your task is to answer questions about the new PR code (the '+' lines), and provide feedback.
 Be informative, constructive, and give examples. Try to be as specific as possible.
 Don't avoid answering the questions. You must answer the questions, as best as you can, without adding unrelated content.
 Make sure not to repeat modifications already implemented in the new PR code (the '+' lines).
 """
 user="""PR Info:
 Title: '{{title}}'
 Branch: '{{branch}}'
 Description: '{{description}}'
 {%- if language %}
-
+Main language: {{language}}
 Main PR language: '{{ language }}'
 {%- endif %}
 {%- if commit_messages_str %}
 Commit messages:
-'
+{{commit_messages_str}}
 {{ commit_messages_str }}
 '
 {%- endif %}
--- a/pr_agent/settings/pr_reviewer_prompts.toml
+++ b/pr_agent/settings/pr_reviewer_prompts.toml
@ -1,7 +1,6 @@
 [pr_review_prompt]
-system="""You are PR-Reviewer, a language model designed to review a git Pull Request (PR).
+system="""You are PR-Reviewer, a language model designed to review git pull requests.
 Your task is to provide constructive and concise feedback for the PR, and also provide meaningful code suggestions.
 The review should focus on new code added in the PR diff (lines starting with '+')
 Example PR Diff input:
 '
@ -23,14 +22,14 @@ code line that already existed in the file....
 ...
 '
-{%- if num_code_suggestions > 0 %}
+The review should focus on new code added in the PR (lines starting with '+'), and not on code that already existed in the file (lines starting with '-', or without prefix).
-Code suggestions guidelines:
+{%- if num_code_suggestions > 0 %}
 - Provide up to {{ num_code_suggestions }} code suggestions. Try to provide diverse and insightful suggestions.
 - Focus on important suggestions like fixing code problems, issues and bugs. As a second priority, provide suggestions for meaningful code improvements, like performance, vulnerability, modularity, and best practices.
 - Avoid making suggestions that have already been implemented in the PR code. For example, if you want to add logs, or change a variable to const, or anything else, make sure it isn't already in the PR code.
 - Don't suggest to add docstring, type hints, or comments.
- Suggestions should focus on the new code added in the PR diff (lines starting with '+')
+- Suggestions should focus on improving the new code added in the PR (lines starting with '+')
 {%- endif %}
 {%- if extra_instructions %}
@ -94,7 +93,7 @@ PR Analysis:
    description: >-
      Estimate, on a scale of 1-5 (inclusive), the time and effort required to review this PR by an experienced and knowledgeable developer. 1 means short and easy review , 5 means long and hard review.
      Take into account the size, complexity, quality, and the needed changes of the PR code diff.
-      Explain your answer shortly (1-2 sentences). Use the format: '1, because ...'
+      Explain your answer shortly (1-2 sentences).
 {%- endif %}
 PR Feedback:
  General suggestions:
@ -131,8 +130,7 @@ PR Feedback:
  Security concerns:
    type: string
    description: >-
-      does this PR code introduce possible vulnerabilities such as exposure of sensitive information (e.g., API keys, secrets, passwords), or security concerns like SQL injection, XSS, CSRF, and others ? Answer 'No' if there are no possible issues.
+      yes\\no question: does this PR code introduce possible vulnerabilities such as exposure of sensitive information (e.g., API keys, secrets, passwords), or security concerns like SQL injection, XSS, CSRF, and others ? If answered 'yes', explain your answer briefly.
      Answer 'Yes, because ...' if there are security concerns or issues. Explain your answer shortly.
 {%- endif %}
 ```
@ -180,29 +178,16 @@ Don't repeat the prompt in the answer, and avoid outputting the 'type' and 'desc
 """
 user="""PR Info:
 Title: '{{title}}'
 Branch: '{{branch}}'
-
+Description: '{{description}}'
 {%- if description %}
 Description:
 '
 {{description}}
 '
 {%- endif %}
 {%- if language %}
-
+Main language: {{language}}
 Main PR language: '{{ language }}'
 {%- endif %}
 {%- if commit_messages_str %}
 Commit messages:
 '
 {{commit_messages_str}}
 '
 {%- endif %}
 {%- if question_str %}
@ -222,7 +207,7 @@ The PR Git Diff:
 ```
 {{diff}}
 ```
-
+Note that lines in the diff body are prefixed with a symbol that represents the type of change: '-' for deletions, '+' for additions. Focus on the '+' lines.
 Response (should be a valid YAML, and nothing else):
 ```yaml
--- a/pr_agent/settings/pr_sort_code_suggestions_prompts.toml
+++ b/pr_agent/settings/pr_sort_code_suggestions_prompts.toml
@ -2,10 +2,10 @@
 system="""
 """
-user="""You are given a list of code suggestions to improve a git Pull Request (PR):
+user="""You are given a list of code suggestions to improve a PR:
-'
+
 {{ suggestion_str|trim }}
-'
+
 Your task is to sort the code suggestions by their order of importance, and return a list with sorting order.
 The sorting order is a list of pairs, where each pair contains the index of the suggestion in the original list.
--- a/pr_agent/settings/pr_update_changelog_prompts.toml
+++ b/pr_agent/settings/pr_update_changelog_prompts.toml
@ -15,23 +15,16 @@ Extra instructions from the user:
 """
 user="""PR Info:
 Title: '{{title}}'
 Branch: '{{branch}}'
 Description: '{{description}}'
 {%- if language %}
-
+Main language: {{language}}
 Main PR language: '{{ language }}'
 {%- endif %}
 {%- if commit_messages_str %}
 Commit messages:
-'
+{{commit_messages_str}}
 {{ commit_messages_str }}
 '
 {%- endif %}
--- a/pr_agent/tools/pr_code_suggestions.py
+++ b/pr_agent/tools/pr_code_suggestions.py
@ -1,6 +1,7 @@
 import copy
 import textwrap
 from typing import Dict, List
 from jinja2 import Environment, StrictUndefined
 from pr_agent.algo.ai_handler import AiHandler
@ -54,9 +55,9 @@ class PRCodeSuggestions:
        try:
            get_logger().info('Generating code suggestions for PR...')
            if get_settings().config.publish_output:
-                self.git_provider.publish_comment("Preparing suggestions...", is_temporary=True)
+                self.git_provider.publish_comment("Preparing review...", is_temporary=True)
-            get_logger().info('Preparing PR code suggestions...')
+            get_logger().info('Preparing PR review...')
            if not self.is_extended:
                await retry_with_fallback_models(self._prepare_prediction)
                data = self._prepare_pr_code_suggestions()
@ -72,14 +73,10 @@ class PRCodeSuggestions:
                data['Code suggestions'] = await self.rank_suggestions(data['Code suggestions'])
            if get_settings().config.publish_output:
-                get_logger().info('Pushing PR code suggestions...')
+                get_logger().info('Pushing PR review...')
                self.git_provider.remove_initial_comment()
-                if get_settings().pr_code_suggestions.summarize:
+                get_logger().info('Pushing inline code suggestions...')
-                    get_logger().info('Pushing summarize code suggestions...')
+                self.push_inline_code_suggestions(data)
                    self.publish_summarizes_suggestions(data)
                else:
                    get_logger().info('Pushing inline code suggestions...')
                    self.push_inline_code_suggestions(data)
        except Exception as e:
            get_logger().error(f"Failed to generate code suggestions for PR, error: {e}")
@ -119,7 +116,6 @@ class PRCodeSuggestions:
        code_suggestions = []
        if not data['Code suggestions']:
            get_logger().info('No suggestions found to improve this PR.')
            return self.git_provider.publish_comment('No suggestions found to improve this PR.')
        for d in data['Code suggestions']:
@ -248,27 +244,4 @@ class PRCodeSuggestions:
        return data_sorted
    def publish_summarizes_suggestions(self, data: Dict):
        try:
            data_markdown = "## PR Code Suggestions\n\n"
            for s in data['Code suggestions']:
                code_snippet_link = self.git_provider.get_line_link(s['relevant file'], s['relevant lines start'],
                                                                    s['relevant lines end'])
                data_markdown += f"\n💡 Suggestion:\n\n**{s['suggestion content']}**\n\n"
                if code_snippet_link:
                    data_markdown += f" File: [{s['relevant file']} ({s['relevant lines start']}-{s['relevant lines end']})]({code_snippet_link})\n\n"
                else:
                    data_markdown += f"File: {s['relevant file']} ({s['relevant lines start']}-{s['relevant lines end']})\n\n"
                if self.git_provider.is_supported("gfm_markdown"):
                    data_markdown += "<details> <summary> Example code:</summary>\n\n"
                    data_markdown += f"___\n\n"
                data_markdown += f"Existing code:\n```{self.main_language}\n{s['existing code']}\n```\n"
                data_markdown += f"Improved code:\n```{self.main_language}\n{s['improved code']}\n```\n"
                if self.git_provider.is_supported("gfm_markdown"):
                    data_markdown += "</details>\n"
                data_markdown += "\n___\n\n"
            self.git_provider.publish_comment(data_markdown)
        except Exception as e:
            get_logger().info(f"Failed to publish summarized code suggestions, error: {e}")
--- a/pr_agent/tools/pr_description.py
+++ b/pr_agent/tools/pr_description.py
@ -44,7 +44,8 @@ class PRDescription:
            "extra_instructions": get_settings().pr_description.extra_instructions,
            "commit_messages_str": self.git_provider.get_commit_messages(),
            "enable_custom_labels": get_settings().config.enable_custom_labels,
-            "custom_labels_class": "",  # will be filled if necessary in 'set_custom_labels' function
+            "custom_labels": "",
            "custom_labels_examples": "",
        }
        self.user_description = self.git_provider.get_user_description()
@ -157,9 +158,6 @@ class PRDescription:
            user=user_prompt
        )
        if get_settings().config.verbosity_level >= 2:
            get_logger().info(f"\nAI response:\n{response}")
        return response
    def _prepare_data(self):
@ -174,16 +172,16 @@ class PRDescription:
        pr_types = []
        # If the 'PR Type' key is present in the dictionary, split its value by comma and assign it to 'pr_types'
-        if 'labels' in self.data:
+        if 'PR Labels' in self.data:
-            if type(self.data['labels']) == list:
+            if type(self.data['PR Labels']) == list:
-                pr_types = self.data['labels']
+                pr_types = self.data['PR Labels']
-            elif type(self.data['labels']) == str:
+            elif type(self.data['PR Labels']) == str:
-                pr_types = self.data['labels'].split(',')
+                pr_types = self.data['PR Labels'].split(',')
-        elif 'type' in self.data:
+        elif 'PR Type' in self.data:
-            if type(self.data['type']) == list:
+            if type(self.data['PR Type']) == list:
-                pr_types = self.data['type']
+                pr_types = self.data['PR Type']
-            elif type(self.data['type']) == str:
+            elif type(self.data['PR Type']) == str:
-                pr_types = self.data['type'].split(',')
+                pr_types = self.data['PR Type'].split(',')
        return pr_types
    def _prepare_pr_answer_with_markers(self) -> Tuple[str, str]:
@ -195,12 +193,12 @@ class PRDescription:
        else:
            ai_header = ""
-        ai_type = self.data.get('type')
+        ai_type = self.data.get('PR Type')
        if ai_type and not re.search(r'<!--\s*pr_agent:type\s*-->', body):
            pr_type = f"{ai_header}{ai_type}"
            body = body.replace('pr_agent:type', pr_type)
-        ai_summary = self.data.get('description')
+        ai_summary = self.data.get('PR Description')
        if ai_summary and not re.search(r'<!--\s*pr_agent:summary\s*-->', body):
            summary = f"{ai_header}{ai_summary}"
            body = body.replace('pr_agent:summary', summary)
@ -230,16 +228,16 @@ class PRDescription:
        # Iterate over the dictionary items and append the key and value to 'markdown_text' in a markdown format
        markdown_text = ""
        # Don't display 'PR Labels'
-        if 'labels' in self.data and self.git_provider.is_supported("get_labels"):
+        if 'PR Labels' in self.data and self.git_provider.is_supported("get_labels"):
-            self.data.pop('labels')
+            self.data.pop('PR Labels')
        if not get_settings().pr_description.enable_pr_type:
-            self.data.pop('type')
+            self.data.pop('PR Type')
        for key, value in self.data.items():
            markdown_text += f"## {key}\n\n"
            markdown_text += f"{value}\n\n"
        # Remove the 'PR Title' key from the dictionary
-        ai_title = self.data.pop('title', self.vars["title"])
+        ai_title = self.data.pop('PR Title', self.vars["title"])
        if get_settings().pr_description.keep_original_user_title:
            # Assign the original PR title to the 'title' variable
            title = self.vars["title"]
@ -258,7 +256,7 @@ class PRDescription:
                    pr_body += "<details> <summary>files:</summary>\n\n"
                for file in value:
                    filename = file['filename'].replace("'", "`")
-                    description = file['changes_in_file']
+                    description = file['changes in file']
                    pr_body += f'- `{filename}`: {description}\n'
                if self.git_provider.is_supported("gfm_markdown"):
                    pr_body +="</details>\n"
--- a/pr_agent/tools/pr_generate_labels.py
+++ b/pr_agent/tools/pr_generate_labels.py
@ -43,8 +43,9 @@ class PRGenerateLabels:
            "use_bullet_points": get_settings().pr_description.use_bullet_points,
            "extra_instructions": get_settings().pr_description.extra_instructions,
            "commit_messages_str": self.git_provider.get_commit_messages(),
            "custom_labels": "",
            "custom_labels_examples": "",
            "enable_custom_labels": get_settings().config.enable_custom_labels,
            "custom_labels_class": "",  # will be filled if necessary in 'set_custom_labels' function
        }
        # Initialize the token handler
@ -147,9 +148,6 @@ class PRGenerateLabels:
            user=user_prompt
        )
        if get_settings().config.verbosity_level >= 2:
            get_logger().info(f"\nAI response:\n{response}")
        return response
    def _prepare_data(self):
@ -161,11 +159,11 @@ class PRGenerateLabels:
    def _prepare_labels(self) -> List[str]:
        pr_types = []
-        # If the 'labels' key is present in the dictionary, split its value by comma and assign it to 'pr_types'
+        # If the 'PR Type' key is present in the dictionary, split its value by comma and assign it to 'pr_types'
-        if 'labels' in self.data:
+        if 'PR Type' in self.data:
-            if type(self.data['labels']) == list:
+            if type(self.data['PR Type']) == list:
-                pr_types = self.data['labels']
+                pr_types = self.data['PR Type']
-            elif type(self.data['labels']) == str:
+            elif type(self.data['PR Type']) == str:
-                pr_types = self.data['labels'].split(',')
+                pr_types = self.data['PR Type'].split(',')
        return pr_types
--- a/pr_agent/tools/pr_reviewer.py
+++ b/pr_agent/tools/pr_reviewer.py
@ -10,7 +10,7 @@ from yaml import SafeLoader
 from pr_agent.algo.ai_handler import AiHandler
 from pr_agent.algo.pr_processing import get_pr_diff, retry_with_fallback_models
 from pr_agent.algo.token_handler import TokenHandler
-from pr_agent.algo.utils import convert_to_markdown, load_yaml, try_fix_yaml, set_custom_labels, get_user_labels
+from pr_agent.algo.utils import convert_to_markdown, load_yaml, try_fix_yaml, set_custom_labels
 from pr_agent.config_loader import get_settings
 from pr_agent.git_providers import get_git_provider
 from pr_agent.git_providers.git_provider import IncrementalPR, get_main_pr_language
@ -121,8 +121,8 @@ class PRReviewer:
                # publish the review
                if get_settings().pr_reviewer.persistent_comment and not self.incremental.is_incremental:
                    self.git_provider.publish_persistent_comment(pr_comment,
-                                                                 initial_header="## PR Analysis",
+                                                                 initial_text="## PR Analysis",
-                                                                 update_header=True)
+                                                                 updated_text="## PR Analysis (updated)")
                else:
                    self.git_provider.publish_comment(pr_comment)
@ -178,9 +178,6 @@ class PRReviewer:
            user=user_prompt
        )
        if get_settings().config.verbosity_level >= 2:
            get_logger().info(f"\nAI response:\n{response}")
        return response
    def _prepare_pr_review(self) -> str:
@ -249,18 +246,11 @@ class PRReviewer:
        # Add help text if not in CLI mode
        if not get_settings().get("CONFIG.CLI_MODE", False):
            markdown_text += "\n### How to use\n"
            if self.git_provider.is_supported("gfm_markdown"):
                markdown_text += "\n <details> <summary> Instructions</summary>\n\n"
            bot_user = "[bot]" if get_settings().github_app.override_deployment_type else get_settings().github_app.bot_user
            if user and bot_user not in user:
                markdown_text += bot_help_text(user)
            else:
                markdown_text += actions_help_text
            if self.git_provider.is_supported("gfm_markdown"):
                markdown_text += "\n</details>\n"
        # Add custom labels from the review prediction (effort, security)
        self.set_review_labels(data)
        # Log markdown response if verbosity level is high
        if get_settings().config.verbosity_level >= 2:
@ -278,7 +268,14 @@ class PRReviewer:
        if get_settings().pr_reviewer.num_code_suggestions == 0:
            return
-        data = load_yaml(self.prediction.strip())
+        review_text = self.prediction.strip()
        review_text = review_text.removeprefix('```yaml').rstrip('`')
        try:
            data = yaml.load(review_text, Loader=SafeLoader)
        except Exception as e:
            get_logger().error(f"Failed to parse AI prediction: {e}")
            data = try_fix_yaml(review_text)
        comments: List[str] = []
        for suggestion in data.get('PR Feedback', {}).get('Code feedback', []):
            relevant_file = suggestion.get('relevant file', '').strip()
@ -375,29 +372,3 @@ class PRReviewer:
            )
            return False
        return True
    def set_review_labels(self, data):
        if (get_settings().pr_reviewer.enable_review_labels_security or
                get_settings().pr_reviewer.enable_review_labels_effort):
            try:
                review_labels = []
                if get_settings().pr_reviewer.enable_review_labels_effort:
                    estimated_effort = data['PR Analysis']['Estimated effort to review [1-5]']
                    estimated_effort_number = int(estimated_effort.split(',')[0])
                    if 1 <= estimated_effort_number <= 5: # 1, because ...
                        review_labels.append(f'Review effort [1-5]: {estimated_effort_number}')
                if get_settings().pr_reviewer.enable_review_labels_security:
                    security_concerns = data['PR Analysis']['Security concerns'] # yes, because ...
                    security_concerns_bool = 'yes' in security_concerns.lower() or 'true' in security_concerns.lower()
                    if security_concerns_bool:
                        review_labels.append('Possible security concern')
                current_labels = self.git_provider.get_labels()
                current_labels_filtered = [label for label in current_labels if
                                           not label.lower().startswith('review effort [1-5]:') and not label.lower().startswith(
                                               'possible security concern')]
                if current_labels or review_labels:
                    get_logger().info(f"Setting review labels: {review_labels + current_labels_filtered}")
                    self.git_provider.publish_labels(review_labels + current_labels_filtered)
            except Exception as e:
                get_logger().error(f"Failed to set review labels, error: {e}")
--- a/pr_agent/tools/pr_similar_issue.py
+++ b/pr_agent/tools/pr_similar_issue.py
@ -8,7 +8,6 @@ import pinecone
 from pinecone_datasets import Dataset, DatasetMetadata
 from pydantic import BaseModel, Field
 from pr_agent.algo import MAX_TOKENS
 from pr_agent.algo.token_handler import TokenHandler
 from pr_agent.algo.utils import get_max_tokens
 from pr_agent.config_loader import get_settings
--- a/requirements.txt
+++ b/requirements.txt
@ -13,7 +13,7 @@ atlassian-python-api==3.39.0
 GitPython==3.1.32
 PyYAML==6.0
 starlette-context==0.3.6
-litellm==0.12.5
+litellm~=0.1.574
 boto3==1.28.25
 google-cloud-storage==2.10.0
 ujson==5.8.0
@ -22,4 +22,3 @@ msrest==0.7.1
 pinecone-client
 pinecone-datasets @ git+https://github.com/mrT23/pinecone-datasets.git@main
 loguru==0.7.2
 google-cloud-aiplatform==1.35.0
--- a/tests/unittest/test_bitbucket_provider.py
+++ b/tests/unittest/test_bitbucket_provider.py
@ -1,4 +1,3 @@
 from pr_agent.git_providers import BitbucketServerProvider
 from pr_agent.git_providers.bitbucket_provider import BitbucketProvider
@ -9,10 +8,3 @@ class TestBitbucketProvider:
        assert workspace_slug == "WORKSPACE_XYZ"
        assert repo_slug == "MY_TEST_REPO"
        assert pr_number == 321
    def test_bitbucket_server_pr_url(self):
        url = "https://git.onpreminstance.com/projects/AAA/repos/my-repo/pull-requests/1"
        workspace_slug, repo_slug, pr_number = BitbucketServerProvider._parse_pr_url(url)
        assert workspace_slug == "AAA"
        assert repo_slug == "my-repo"
        assert pr_number == 1
--- a/tests/unittest/test_clip_tokens.py
+++ b/tests/unittest/test_clip_tokens.py
@ -1,19 +0,0 @@
 # Generated by CodiumAI
 import pytest
 from pr_agent.algo.utils import clip_tokens
 class TestClipTokens:
    def test_clip(self):
        text = "line1\nline2\nline3\nline4\nline5\nline6"
        max_tokens = 25
        result = clip_tokens(text, max_tokens)
        assert result == text
        max_tokens = 10
        result = clip_tokens(text, max_tokens)
        expected_results = 'line1\nline2\nline3\nli...(truncated)'
        assert result == expected_results
--- a/tests/unittest/test_convert_to_markdown.py
+++ b/tests/unittest/test_convert_to_markdown.py
@ -71,7 +71,7 @@ class TestConvertToMarkdown:
 - 📌 **Type of PR:** Test type\n\
 - 🧪 **Relevant tests added:** no\n\
 - ✨ **Focused PR:** Yes\n\
-  **General PR suggestions:** general suggestion...\n\n\n- <details><summary> 🤖 Code feedback:</summary>\n\n  - **Code example:**\n    - **Before:**\n        ```\n        Code before\n        ```\n    - **After:**\n        ```\n        Code after\n        ```\n\n  - **Code example:**\n    - **Before:**\n        ```\n        Code before 2\n        ```\n    - **After:**\n        ```\n        Code after 2\n        ```\n\n</details>\
+-  **General PR suggestions:** general suggestion...\n\n\n- **<details><summary> 🤖 Code feedback:**</summary>\n\n  - **Code example:**\n    - **Before:**\n        ```\n        Code before\n        ```\n    - **After:**\n        ```\n        Code after\n        ```\n\n  - **Code example:**\n    - **Before:**\n        ```\n        Code before 2\n        ```\n    - **After:**\n        ```\n        Code after 2\n        ```\n\n</details>\
 """
        assert convert_to_markdown(input_data).strip() == expected_output.strip()
--- a/tests/unittest/test_load_yaml.py
+++ b/tests/unittest/test_load_yaml.py
@ -2,9 +2,6 @@
 # Generated by CodiumAI
 import pytest
 import yaml
 from yaml.scanner import ScannerError
 from pr_agent.algo.utils import load_yaml
@ -15,7 +12,7 @@ class TestLoadYaml:
        expected_output = {'name': 'John Smith', 'age': 35}
        assert load_yaml(yaml_str) == expected_output
-    def test_load_invalid_yaml1(self):
+    def test_load_complicated_yaml(self):
        yaml_str = \
 '''\
 PR Analysis:
@ -29,23 +26,7 @@ PR Feedback:
  Code feedback:
    - relevant file: pr_agent/settings/pr_description_prompts.toml
      suggestion: Consider using a more descriptive variable name than 'user' for the command prompt. A more descriptive name would make the code more readable and maintainable. [medium]
-      relevant line: user="""PR Info: aaa
+      relevant line: 'user="""PR Info:'
  Security concerns: No'''
-        with pytest.raises(ScannerError):
+        expected_output = {'PR Analysis': {'Main theme': 'Enhancing the `/describe` command prompt by adding title and description', 'Type of PR': 'Enhancement', 'Relevant tests added': False, 'Focused PR': 'Yes, the PR is focused on enhancing the `/describe` command prompt.'}, 'PR Feedback': {'General suggestions': 'The PR seems to be well-structured and focused on a specific enhancement. However, it would be beneficial to add tests to ensure the new feature works as expected.', 'Code feedback': [{'relevant file': 'pr_agent/settings/pr_description_prompts.toml', 'suggestion': "Consider using a more descriptive variable name than 'user' for the command prompt. A more descriptive name would make the code more readable and maintainable. [medium]", 'relevant line': 'user="""PR Info:'}], 'Security concerns': False}}
            yaml.safe_load(yaml_str)
        expected_output = {'PR Analysis': {'Main theme': 'Enhancing the `/describe` command prompt by adding title and description', 'Type of PR': 'Enhancement', 'Relevant tests added': False, 'Focused PR': 'Yes, the PR is focused on enhancing the `/describe` command prompt.'}, 'PR Feedback': {'General suggestions': 'The PR seems to be well-structured and focused on a specific enhancement. However, it would be beneficial to add tests to ensure the new feature works as expected.', 'Code feedback': [{'relevant file': 'pr_agent/settings/pr_description_prompts.toml', 'suggestion': "Consider using a more descriptive variable name than 'user' for the command prompt. A more descriptive name would make the code more readable and maintainable. [medium]", 'relevant line': 'user="""PR Info: aaa'}], 'Security concerns': False}}
        assert load_yaml(yaml_str) == expected_output
    def test_load_invalid_yaml2(self):
        yaml_str = '''\
 - relevant file: src/app.py:
  suggestion content: The print statement is outside inside the if __name__ ==: \
  '''
        with pytest.raises(ScannerError):
            yaml.safe_load(yaml_str)
        expected_output =[{'relevant file': 'src/app.py:',
  'suggestion content': 'The print statement is outside inside the if __name__ ==:   '}]
        assert load_yaml(yaml_str) == expected_output
--- a/tests/unittest/test_parse_code_suggestion.py
+++ b/tests/unittest/test_parse_code_suggestion.py
@ -61,7 +61,7 @@ class TestParseCodeSuggestion:
            'before': 'Before 1',
            'after': 'After 1'
        }
-        expected_output = '   **suggestion:** Suggestion 1  \n   **description:** Description 1  \n   **before:** Before 1  \n   **after:** After 1  \n\n'  # noqa: E501
+        expected_output = "   **suggestion:** Suggestion 1\n   **description:** Description 1\n   **before:** Before 1\n   **after:** After 1\n\n"  # noqa: E501
        assert parse_code_suggestion(code_suggestions) == expected_output
    # Tests that function returns correct output when input dictionary has 'code example' key
@ -74,5 +74,5 @@ class TestParseCodeSuggestion:
                'after': 'After 2'
            }
        }
-        expected_output = '   **suggestion:** Suggestion 2  \n   **description:** Description 2  \n  - **code example:**\n    - **before:**\n        ```\n        Before 2\n        ```\n    - **after:**\n        ```\n        After 2\n        ```\n\n'  # noqa: E501
+        expected_output = "   **suggestion:** Suggestion 2\n   **description:** Description 2\n  - **code example:**\n    - **before:**\n        ```\n        Before 2\n        ```\n    - **after:**\n        ```\n        After 2\n        ```\n\n"  # noqa: E501
        assert parse_code_suggestion(code_suggestions) == expected_output
Author	SHA1	Message	Date
Hussam.lawen	5fb8bc1927	test	2023-11-20 00:42:29 +02:00
Hussam.lawen	e9315c7d28	Merge commit 'e878bbbe369c90433c1b261b5479d23c47734539' into hl/test_docstring	2023-11-15 10:37:31 +02:00
Hussam.lawen	67b61d722d	test	2023-11-14 20:31:01 +02:00