fix improve

Merge pull request #470 from Codium-ai/tr/glob
Enhance glob pattern handling and logging in file filtering
2025-07-04 21:00:40 +08:00 · 2023-11-27 12:32:53 +02:00 · 2023-11-22 23:19:09 -08:00 · 2023-11-23 09:16:50 +02:00 · 2023-11-22 22:14:22 -08:00 · 2023-11-23 08:06:07 +02:00
38 changed files with 750 additions and 266 deletions
--- a/.github/workflows/pr-agent-review.yaml
+++ b/.github/workflows/pr-agent-review.yaml
@ -26,5 +26,7 @@ jobs:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          PINECONE.API_KEY: ${{ secrets.PINECONE_API_KEY }}
          PINECONE.ENVIRONMENT: ${{ secrets.PINECONE_ENVIRONMENT }}
+          GITHUB_ACTION.AUTO_REVIEW: 'true'
+          GITHUB_ACTION.AUTO_IMPROVE: 'true'


--- a/.pr_agent.toml
+++ b/.pr_agent.toml
@ -0,0 +1,2 @@
+[pr_reviewer]
+enable_review_labels_effort = true
--- a/INSTALL.md
+++ b/INSTALL.md
@ -29,39 +29,43 @@ There are several ways to use PR-Agent:

 ### Use Docker image (no installation required)

-To request a review for a PR, or ask a question about a PR, you can run directly from the Docker image. Here's how:
+A list of the relevant tools can be found in the [tools guide](./docs/TOOLS_GUIDE.md).

-For GitHub:
+To invoke a tool (for example `review`), you can run directly from the Docker image. Here's how:
+
+- For GitHub:
 ```
 docker run --rm -it -e OPENAI.KEY=<your key> -e GITHUB.USER_TOKEN=<your token> codiumai/pr-agent:latest --pr_url <pr_url> review
 ```
-For GitLab:
+
+- For GitLab:
 ```
 docker run --rm -it -e OPENAI.KEY=<your key> -e CONFIG.GIT_PROVIDER=gitlab -e GITLAB.PERSONAL_ACCESS_TOKEN=<your token> codiumai/pr-agent:latest --pr_url <pr_url> review
 ```
-For BitBucket:
+
+Note: If you have a dedicated GitLab instance, you need to specify the custom url as variable:
+```
+docker run --rm -it -e OPENAI.KEY=<your key> -e CONFIG.GIT_PROVIDER=gitlab -e GITLAB.PERSONAL_ACCESS_TOKEN=<your token> GITLAB.URL=<your gitlab instance url> codiumai/pr-agent:latest --pr_url <pr_url> review
+```
+
+- For BitBucket:
 ```
 docker run --rm -it -e CONFIG.GIT_PROVIDER=bitbucket -e OPENAI.KEY=$OPENAI_API_KEY -e BITBUCKET.BEARER_TOKEN=$BITBUCKET_BEARER_TOKEN codiumai/pr-agent:latest --pr_url=<pr_url> review
 ```

 For other git providers, update CONFIG.GIT_PROVIDER accordingly, and check the `pr_agent/settings/.secrets_template.toml` file for the environment variables expected names and values.

-
-Similarly, to ask a question about a PR, run the following command:
-```
-docker run --rm -it -e OPENAI.KEY=<your key> -e GITHUB.USER_TOKEN=<your token> codiumai/pr-agent --pr_url <pr_url> ask "<your question>"
-```
-
-A list of the relevant tools can be found in the [tools guide](./docs/TOOLS_GUIDE.md).
+---


-Note: If you want to ensure you're running a specific version of the Docker image, consider using the image's digest:
+If you want to ensure you're running a specific version of the Docker image, consider using the image's digest:
 ```bash
 docker run --rm -it -e OPENAI.KEY=<your key> -e GITHUB.USER_TOKEN=<your token> codiumai/pr-agent@sha256:71b5ee15df59c745d352d84752d01561ba64b6d51327f97d46152f0c58a5f678 --pr_url <pr_url> review
 ```
-in addition, you can run a [specific released versions](./RELEASE_NOTES.md) of pr-agent, for example:
+
+Or you can run a [specific released versions](./RELEASE_NOTES.md) of pr-agent, for example:
 ```
-codiumai/pr-agent@v0.8
+codiumai/pr-agent@v0.9
 ```

 ---
@ -97,6 +101,7 @@ python3 -m pr_agent.cli --pr_url <pr_url> ask <your question>
 python3 -m pr_agent.cli --pr_url <pr_url> describe
 python3 -m pr_agent.cli --pr_url <pr_url> improve
 python3 -m pr_agent.cli --pr_url <pr_url> add_docs
+python3 -m pr_agent.cli --pr_url <pr_url> generate_labels
 python3 -m pr_agent.cli --issue_url <issue_url> similar_issue
 ...
 ```
@ -405,10 +410,12 @@ BITBUCKET_BEARER_TOKEN: <your token>

 You can get a Bitbucket token for your repository by following Repository Settings -> Security -> Access Tokens.

+Note that comments on a PR are not supported in Bitbucket Pipeline.

-### Run on a hosted Bitbucket app

-Please contact <support@codium.ai> if you're interested in a hosted BitBucket app solution that provides full functionality including PR reviews and comment handling. It's based on the [bitbucket_app.py](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/git_providers/bitbucket_provider.py) implmentation.
+### Run using CodiumAI-hosted Bitbucket app
+
+Please contact <support@codium.ai> or visit [CodiumAI pricing page](https://www.codium.ai/pricing/) if you're interested in a hosted BitBucket app solution that provides full functionality including PR reviews and comment handling. It's based on the [bitbucket_app.py](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/git_providers/bitbucket_provider.py) implementation.


 =======
--- a/RELEASE_NOTES.md
+++ b/RELEASE_NOTES.md
@ -1,3 +1,25 @@
+## [Version 0.10] - 2023-11-15
+- codiumai/pr-agent:0.10
+- codiumai/pr-agent:0.10-github_app
+- codiumai/pr-agent:0.10-bitbucket-app
+- codiumai/pr-agent:0.10-gitlab_webhook
+- codiumai/pr-agent:0.10-github_polling
+- codiumai/pr-agent:0.10-github_action
+
+### Added::Algo
+- Review tool now works with [persistent comments](https://github.com/Codium-ai/pr-agent/pull/451) by default
+- Bitbucket now publishes review suggestions with [code links](https://github.com/Codium-ai/pr-agent/pull/428)
+- Enabling to limit [max number of tokens](https://github.com/Codium-ai/pr-agent/pull/437/files)
+- Support ['gpt-4-1106-preview'](https://github.com/Codium-ai/pr-agent/pull/437/files) model
+- Support for Google's [Vertex AI](https://github.com/Codium-ai/pr-agent/pull/436)
+- Implementing [thresholds](https://github.com/Codium-ai/pr-agent/pull/423) for incremental PR reviews
+- Decoupled custom labels from [PR type](https://github.com/Codium-ai/pr-agent/pull/431)
+
+### Fixed
+- Fixed bug in [parsing quotes](https://github.com/Codium-ai/pr-agent/pull/446) in CLI
+- Preserve [user-added labels](https://github.com/Codium-ai/pr-agent/pull/433) in pull requests
+- Bug fixes in GitLab and BitBucket
+
 ## [Version 0.9] - 2023-10-29
 - codiumai/pr-agent:0.9
 - codiumai/pr-agent:0.9-github_app
--- a/Usage.md
+++ b/Usage.md
@ -32,12 +32,19 @@ The [Tools Guide](./docs/TOOLS_GUIDE.md) provides a detailed description of the
 #### Ignoring files from analysis
 In some cases, you may want to exclude specific files or directories from the analysis performed by CodiumAI PR-Agent. This can be useful, for example, when you have files that are generated automatically or files that shouldn't be reviewed, like vendored code.

-To ignore files or directories, edit the **[ignore.toml](/pr_agent/settings/ignore.toml)** configuration file. This setting is also exposed the following environment variables:
+To ignore files or directories, edit the **[ignore.toml](/pr_agent/settings/ignore.toml)** configuration file. This setting also exposes the following environment variables:

 - `IGNORE.GLOB`
 - `IGNORE.REGEX`

-See [dynaconf envvars documentation](https://www.dynaconf.com/envvars/).
+For example, to ignore python files in a PR with online usage, comment on a PR:
+`/review --ignore.glob=['*.py']`
+
+To ignore python files in all PRs, set in a configuration file:
+```
+[ignore]
+glob = ['*.py']
+```

 #### git provider
 The [git_provider](pr_agent/settings/configuration.toml#L4) field in the configuration file determines the GIT provider that will be used by PR-Agent. Currently, the following providers are supported:
@ -59,7 +66,7 @@ The [git_provider](pr_agent/settings/configuration.toml#L4) field in the configu

 ### Working from a local repo (CLI)
 When running from your local repo (CLI), your local configuration file will be used.
-Examples for invoking the different tools via the CLI:
+Examples of invoking the different tools via the CLI:

 - **Review**:       `python -m pr_agent.cli --pr_url=<pr_url>  review`
 - **Describe**:     `python -m pr_agent.cli --pr_url=<pr_url>  describe`
@ -83,7 +90,7 @@ python -m pr_agent.cli --pr_url=<pr_url>  /review --pr_reviewer.extra_instructio
 publish_output=true
 verbosity_level=2
 ```
-This is useful for debugging or experimenting with the different tools.
+This is useful for debugging or experimenting with different tools.


 ### Online usage
@ -100,20 +107,30 @@ Commands for invoking the different tools via comments:


 To edit a specific configuration value, just add `--config_path=<value>` to any command.
-For example if you want to edit the `review` tool configurations, you can run:
+For example, if you want to edit the `review` tool configurations, you can run:
 ```
 /review --pr_reviewer.extra_instructions="..." --pr_reviewer.require_score_review=false
 ```
-Any configuration value in [configuration file](pr_agent/settings/configuration.toml) file can be similarly edited. comment `/config` to see the list of available configurations.
+Any configuration value in [configuration file](pr_agent/settings/configuration.toml) file can be similarly edited. Comment `/config` to see the list of available configurations.


 ### Working with GitHub App
-When running PR-Agent from [GitHub App](INSTALL.md#method-5-run-as-a-github-app), the default configurations from a pre-built docker will be initially loaded.
+When running PR-Agent from GitHub App, the default [configuration file](pr_agent/settings/configuration.toml) from a pre-built docker will be initially loaded.
+
+By uploading a local `.pr_agent.toml` file to the root of the repo's main branch, you can edit and customize any configuration parameter.
+
+For example, if you set in `.pr_agent.toml`:
+
+```
+[pr_reviewer]
+num_code_suggestions=1
+```
+
+Then you will overwrite the default number of code suggestions to 1.

 #### GitHub app automatic tools
-The [github_app](pr_agent/settings/configuration.toml#L56) section defines GitHub app specific configurations.  
+The [github_app](pr_agent/settings/configuration.toml#L76) section defines GitHub app-specific configurations.  
 In this section you can define configurations to control the conditions for which tools will **run automatically**.  
-Note that a local `.pr_agent.toml` file enables you to edit and customize the default parameters of any tool, not just the ones that are run automatically.

 ##### GitHub app automatic tools for PR actions
 The GitHub app can respond to the following actions on a PR:
@ -123,7 +140,7 @@ The GitHub app can respond to the following actions on a PR:
 4. `review_requested` - Specifically requesting review (in the PR reviewers list) from the `github-actions[bot]` user

 The configuration parameter `handle_pr_actions` defines the list of actions for which the GitHub app will trigger the PR-Agent.  
-The configuration parameter `pr_commands` defines the list of tools that will be **run automatically** when one of the above action happens (e.g. a new PR is opened):
+The configuration parameter `pr_commands` defines the list of tools that will be **run automatically** when one of the above actions happens (e.g., a new PR is opened):
 ```
 [github_app]
 handle_pr_actions = ['opened', 'reopened', 'ready_for_review', 'review_requested']
@ -151,7 +168,7 @@ handle_pr_actions = []
 ```

 ##### GitHub app automatic tools for new code (PR push)
-In addition the running automatic tools when a PR is opened, the GitHub app can also respond to new code that is pushed to an open PR.
+In addition to running automatic tools when a PR is opened, the GitHub app can also respond to new code that is pushed to an open PR.

 The configuration toggle `handle_push_trigger` can be used to enable this feature.  
 The configuration parameter `push_commands` defines the list of tools that will be **run automatically** when new code is pushed to the PR.
@ -163,11 +180,11 @@ push_commands = [
    "/auto_review -i --pr_reviewer.remove_previous_review_comment=true",
 ]
 ```
-The means that when new code is pused to the PR, the PR-Agent will run the `describe` and incremental `auto_review` tools.  
+This means that when new code is pushed to the PR, the PR-Agent will run the `describe` and incremental `auto_review` tools.  
 For the describe tool, the `add_original_user_description` and `keep_original_user_title` parameters will be set to true.  
 For the `auto_review` tool, it will run in incremental mode, and the `remove_previous_review_comment` parameter will be set to true.

-Much like the configurations for `pr_commands`, you can override the default tool paramteres by uploading a local configuration file to the root of your repo.
+Much like the configurations for `pr_commands`, you can override the default tool parameters by uploading a local configuration file to the root of your repo.

 #### Editing the prompts
 The prompts for the various PR-Agent tools are defined in the `pr_agent/settings` folder.
@ -293,6 +310,24 @@ key = ...

 Also review the [AiHandler](pr_agent/algo/ai_handler.py) file for instruction how to set keys for other models.

+#### Vertex AI
+
+To use Google's Vertex AI platform and its associated models (chat-bison/codechat-bison) set:
+
+``` 
+[config] # in configuration.toml
+model = "vertex_ai/codechat-bison"
+fallback_models="vertex_ai/codechat-bison"
+
+[vertexai] # in .secrets.toml
+vertex_project = "my-google-cloud-project"
+vertex_location = ""
+```
+
+Your [application default credentials](https://cloud.google.com/docs/authentication/application-default-credentials) will be used for authentication so there is no need to set explicit credentials in most environments.
+
+If you do want to set explicit credentials then you can use the `GOOGLE_APPLICATION_CREDENTIALS` environment variable set to a path to a json credentials file.
+
 ### Working with large PRs

 The default mode of CodiumAI is to have a single call per tool, using GPT-4, which has a token limit of 8000 tokens.
--- a/docs/DESCRIBE.md
+++ b/docs/DESCRIBE.md
@ -27,6 +27,8 @@ Under the section 'pr_description', the [configuration file](./../pr_agent/setti

 - `extra_instructions`: Optional extra instructions to the tool. For example: "focus on the changes in the file X. Ignore change in ...".
 - To enable `custom labels`, apply the configuration changes described [here](./GENERATE_CUSTOM_LABELS.md#configuration-changes)
+- `enable_pr_type`: if set to false, it will not show the `PR type` as a text value in the description content. Default is true.
+  
 ### Markers template

 markers enable to easily integrate user's content and auto-generated content, with a template-like mechanism.
--- a/docs/REVIEW.md
+++ b/docs/REVIEW.md
@ -16,25 +16,46 @@ The `review` tool can also be triggered automatically every time a new PR is ope

 Under the section 'pr_reviewer', the [configuration file](./../pr_agent/settings/configuration.toml#L16) contains options to customize the 'review' tool:

+#### enable\\disable features
 - `require_focused_review`: if set to true, the tool will add a section - 'is the PR a focused one'. Default is false.
 - `require_score_review`: if set to true, the tool will add a section that scores the PR. Default is false.
 - `require_tests_review`: if set to true, the tool will add a section that checks if the PR contains tests. Default is true.
 - `require_security_review`: if set to true, the tool will add a section that checks if the PR contains security issues. Default is true.
 - `require_estimate_effort_to_review`: if set to true, the tool will add a section that estimates thed effort needed to review the PR. Default is true.
+#### general options
 - `num_code_suggestions`: number of code suggestions provided by the 'review' tool. Default is 4.
 - `inline_code_comments`: if set to true, the tool will publish the code suggestions as comments on the code diff. Default is false.
 - `automatic_review`: if set to false, no automatic reviews will be done. Default is true.
+- `remove_previous_review_comment`: if set to true, the tool will remove the previous review comment before adding a new one. Default is false.
+- `persistent_comment`: if set to true, the review comment will be persistent, meaning that every new review request will edit the previous one. Default is true.
 - `extra_instructions`: Optional extra instructions to the tool. For example: "focus on the changes in the file X. Ignore change in ...".
+#### review labels
+- `enable_review_labels_security`: if set to true, the tool will publish a 'possible security issue' label if it detects a security issue. Default is true.
+- `enable_review_labels_effort`: if set to true, the tool will publish a 'Review effort [1-5]: x' label. Default is false.
 - To enable `custom labels`, apply the configuration changes described [here](./GENERATE_CUSTOM_LABELS.md#configuration-changes) 
 ####  Incremental Mode
 For an incremental review, which only considers changes since the last PR-Agent review, this can be useful when working on the PR in an iterative manner, and you want to focus on the changes since the last review instead of reviewing the entire PR again, the following command can be used:
 ```
-/improve -i
+/review -i
 ```
 Note that the incremental mode is only available for GitHub.

 <kbd><img src=./../pics/incremental_review.png width="768"></kbd>

+Under the section 'pr_reviewer', the [configuration file](./../pr_agent/settings/configuration.toml#L16) contains options to customize the 'review -i' tool.  
+These configurations can be used to control the rate at which the incremental review tool will create new review comments when invoked automatically, to prevent making too much noise in the PR.
+- `minimal_commits_for_incremental_review`: Minimal number of commits since the last review that are required to create incremental review.
+If there are less than the specified number of commits since the last review, the tool will not perform any action.
+Default is 0 - the tool will always run, no matter how many commits since the last review.
+- `minimal_minutes_for_incremental_review`: Minimal number of minutes that need to pass since the last reviewed commit to create incremental review.
+If less that the specified number of minutes have passed between the last reviewed commit and running this command, the tool will not perform any action. 
+Default is 0 - the tool will always run, no matter how much time have passed since the last reviewed commit.
+- `require_all_thresholds_for_incremental_review`: If set to true, all the previous thresholds must be met for incremental review to run. If false, only one is enough to run the tool.
+For example, if `minimal_commits_for_incremental_review=2` and `minimal_minutes_for_incremental_review=2`, and we have 3 commits since the last review, but the last reviewed commit is from 1 minute ago:
+When `require_all_thresholds_for_incremental_review=true` the incremental review __will not__ run, because only 1 out of 2 conditions were met (we have enough commits but the last review is too recent),
+but when `require_all_thresholds_for_incremental_review=false` the incremental review __will__ run, because one condition is enough (we have 3 commits which is more than the configured 2).
+Default is false - the tool will run as long as at least once conditions is met.
+
 #### PR Reflection
 By invoking:
 ```
--- a/pr_agent/agent/pr_agent.py
+++ b/pr_agent/agent/pr_agent.py
@ -46,10 +46,13 @@ class PRAgent:
        apply_repo_settings(pr_url)

        # Then, apply user specific settings if exists
-        request = request.replace("'", "\\'")
-        lexer = shlex.shlex(request, posix=True)
-        lexer.whitespace_split = True
-        action, *args = list(lexer)
+        if isinstance(request, str):
+            request = request.replace("'", "\\'")
+            lexer = shlex.shlex(request, posix=True)
+            lexer.whitespace_split = True
+            action, *args = list(lexer)
+        else:
+            action, *args = request
        args = update_settings_from_args(args)

        action = action.lstrip("/").lower()
--- a/pr_agent/algo/init.py
+++ b/pr_agent/algo/init.py
@ -8,9 +8,14 @@ MAX_TOKENS = {
    'gpt-4': 8000,
    'gpt-4-0613': 8000,
    'gpt-4-32k': 32000,
+    'gpt-4-1106-preview': 128000, # 128K, but may be limited by config.max_model_tokens
    'claude-instant-1': 100000,
    'claude-2': 100000,
    'command-nightly': 4096,
    'replicate/llama-2-70b-chat:2c1608e18606fad2812020dc541930f2d0495ce32eee50074220b87300bc16e1': 4096,
-    'meta-llama/Llama-2-7b-chat-hf': 4096
+    'meta-llama/Llama-2-7b-chat-hf': 4096,
+    'vertex_ai/codechat-bison': 6144,
+    'vertex_ai/codechat-bison-32k': 32000,
+    'codechat-bison': 6144,
+    'codechat-bison-32k': 32000,
 }
--- a/pr_agent/algo/ai_handler.py
+++ b/pr_agent/algo/ai_handler.py
@ -23,39 +23,43 @@ class AiHandler:
        Initializes the OpenAI API key and other settings from a configuration file.
        Raises a ValueError if the OpenAI key is missing.
        """
-        try:
+        self.azure = False
+
+        if get_settings().get("OPENAI.KEY", None):
            openai.api_key = get_settings().openai.key
            litellm.openai_key = get_settings().openai.key
-            if get_settings().get("litellm.use_client"):
-                litellm_token = get_settings().get("litellm.LITELLM_TOKEN")
-                assert litellm_token, "LITELLM_TOKEN is required"
-                os.environ["LITELLM_TOKEN"] = litellm_token
-                litellm.use_client = True
-            self.azure = False
-            if get_settings().get("OPENAI.ORG", None):
-                litellm.organization = get_settings().openai.org
-            if get_settings().get("OPENAI.API_TYPE", None):
-                if get_settings().openai.api_type == "azure":
-                    self.azure = True
-                    litellm.azure_key = get_settings().openai.key
-            if get_settings().get("OPENAI.API_VERSION", None):
-                litellm.api_version = get_settings().openai.api_version
-            if get_settings().get("OPENAI.API_BASE", None):
-                litellm.api_base = get_settings().openai.api_base
-            if get_settings().get("ANTHROPIC.KEY", None):
-                litellm.anthropic_key = get_settings().anthropic.key
-            if get_settings().get("COHERE.KEY", None):
-                litellm.cohere_key = get_settings().cohere.key
-            if get_settings().get("REPLICATE.KEY", None):
-                litellm.replicate_key = get_settings().replicate.key
-            if get_settings().get("REPLICATE.KEY", None):
-                litellm.replicate_key = get_settings().replicate.key
-            if get_settings().get("HUGGINGFACE.KEY", None):
-                litellm.huggingface_key = get_settings().huggingface.key
-                if get_settings().get("HUGGINGFACE.API_BASE", None):
-                    litellm.api_base = get_settings().huggingface.api_base
-        except AttributeError as e:
-            raise ValueError("OpenAI key is required") from e
+        if get_settings().get("litellm.use_client"):
+            litellm_token = get_settings().get("litellm.LITELLM_TOKEN")
+            assert litellm_token, "LITELLM_TOKEN is required"
+            os.environ["LITELLM_TOKEN"] = litellm_token
+            litellm.use_client = True
+        if get_settings().get("OPENAI.ORG", None):
+            litellm.organization = get_settings().openai.org
+        if get_settings().get("OPENAI.API_TYPE", None):
+            if get_settings().openai.api_type == "azure":
+                self.azure = True
+                litellm.azure_key = get_settings().openai.key
+        if get_settings().get("OPENAI.API_VERSION", None):
+            litellm.api_version = get_settings().openai.api_version
+        if get_settings().get("OPENAI.API_BASE", None):
+            litellm.api_base = get_settings().openai.api_base
+        if get_settings().get("ANTHROPIC.KEY", None):
+            litellm.anthropic_key = get_settings().anthropic.key
+        if get_settings().get("COHERE.KEY", None):
+            litellm.cohere_key = get_settings().cohere.key
+        if get_settings().get("REPLICATE.KEY", None):
+            litellm.replicate_key = get_settings().replicate.key
+        if get_settings().get("REPLICATE.KEY", None):
+            litellm.replicate_key = get_settings().replicate.key
+        if get_settings().get("HUGGINGFACE.KEY", None):
+            litellm.huggingface_key = get_settings().huggingface.key
+            if get_settings().get("HUGGINGFACE.API_BASE", None):
+                litellm.api_base = get_settings().huggingface.api_base
+        if get_settings().get("VERTEXAI.VERTEX_PROJECT", None):
+            litellm.vertex_project = get_settings().vertexai.vertex_project
+            litellm.vertex_location = get_settings().get(
+                "VERTEXAI.VERTEX_LOCATION", None
+            )

    @property
    def deployment_id(self):
--- a/pr_agent/algo/file_filter.py
+++ b/pr_agent/algo/file_filter.py
@ -11,7 +11,12 @@ def filter_ignored(files):
    try:
        # load regex patterns, and translate glob patterns to regex
        patterns = get_settings().ignore.regex
-        patterns += [fnmatch.translate(glob) for glob in get_settings().ignore.glob]
+        if isinstance(patterns, str):
+            patterns = [patterns]
+        glob_setting = get_settings().ignore.glob
+        if isinstance(glob_setting, str): # --ignore.glob=[.*utils.py], --ignore.glob=.*utils.py
+            glob_setting = glob_setting.strip('[]').split(",")
+        patterns += [fnmatch.translate(glob) for glob in glob_setting]

        # compile all valid patterns
        compiled_patterns = []
@ -23,7 +28,7 @@ def filter_ignored(files):

        # keep filenames that _don't_ match the ignore regex
        for r in compiled_patterns:
-            files = [f for f in files if not r.match(f.filename)]
+            files = [f for f in files if (f.filename and not r.match(f.filename))]

    except Exception as e:
        print(f"Could not filter file list: {e}")
--- a/pr_agent/algo/git_patch_processing.py
+++ b/pr_agent/algo/git_patch_processing.py
@ -3,6 +3,7 @@ from __future__ import annotations
 import re

 from pr_agent.config_loader import get_settings
+from pr_agent.git_providers.git_provider import EDIT_TYPE
 from pr_agent.log import get_logger


@ -115,7 +116,7 @@ def omit_deletion_hunks(patch_lines) -> str:


 def handle_patch_deletions(patch: str, original_file_content_str: str,
-                           new_file_content_str: str, file_name: str) -> str:
+                           new_file_content_str: str, file_name: str, edit_type: EDIT_TYPE = EDIT_TYPE.UNKNOWN) -> str:
    """
    Handle entire file or deletion patches.

@ -132,7 +133,7 @@ def handle_patch_deletions(patch: str, original_file_content_str: str,
        str: The modified patch with deletion hunks omitted.

    """
-    if not new_file_content_str:
+    if not new_file_content_str and edit_type != EDIT_TYPE.ADDED:
        # logic for handling deleted files - don't show patch, just show that the file was deleted
        if get_settings().config.verbosity_level > 0:
            get_logger().info(f"Processing file: {file_name}, minimizing deletion file")
--- a/pr_agent/algo/pr_processing.py
+++ b/pr_agent/algo/pr_processing.py
@ -7,18 +7,20 @@ from typing import Any, Callable, List, Tuple

 from github import RateLimitExceededException

-from pr_agent.algo import MAX_TOKENS
 from pr_agent.algo.git_patch_processing import convert_to_hunks_with_lines_numbers, extend_patch, handle_patch_deletions
 from pr_agent.algo.language_handler import sort_files_by_main_languages
 from pr_agent.algo.file_filter import filter_ignored
 from pr_agent.algo.token_handler import TokenHandler, get_token_encoder
+from pr_agent.algo.utils import get_max_tokens
 from pr_agent.config_loader import get_settings
-from pr_agent.git_providers.git_provider import FilePatchInfo, GitProvider
+from pr_agent.git_providers.git_provider import FilePatchInfo, GitProvider, EDIT_TYPE
 from pr_agent.log import get_logger

 DELETED_FILES_ = "Deleted files:\n"

-MORE_MODIFIED_FILES_ = "More modified files:\n"
+MORE_MODIFIED_FILES_ = "Additional modified files (insufficient token budget to process):\n"
+
+ADDED_FILES_ = "Additional added files (insufficient token budget to process):\n"

 OUTPUT_BUFFER_TOKENS_SOFT_THRESHOLD = 1000
 OUTPUT_BUFFER_TOKENS_HARD_THRESHOLD = 600
@ -64,14 +66,17 @@ def get_pr_diff(git_provider: GitProvider, token_handler: TokenHandler, model: s
        pr_languages, token_handler, add_line_numbers_to_hunks, patch_extra_lines=PATCH_EXTRA_LINES)

    # if we are under the limit, return the full diff
-    if total_tokens + OUTPUT_BUFFER_TOKENS_SOFT_THRESHOLD < MAX_TOKENS[model]:
+    if total_tokens + OUTPUT_BUFFER_TOKENS_SOFT_THRESHOLD < get_max_tokens(model):
        return "\n".join(patches_extended)

    # if we are over the limit, start pruning
-    patches_compressed, modified_file_names, deleted_file_names = \
+    patches_compressed, modified_file_names, deleted_file_names, added_file_names = \
        pr_generate_compressed_diff(pr_languages, token_handler, model, add_line_numbers_to_hunks)

    final_diff = "\n".join(patches_compressed)
+    if added_file_names:
+        added_list_str = ADDED_FILES_ + "\n".join(added_file_names)
+        final_diff = final_diff + "\n\n" + added_list_str
    if modified_file_names:
        modified_list_str = MORE_MODIFIED_FILES_ + "\n".join(modified_file_names)
        final_diff = final_diff + "\n\n" + modified_list_str
@ -122,7 +127,7 @@ def pr_generate_extended_diff(pr_languages: list,


 def pr_generate_compressed_diff(top_langs: list, token_handler: TokenHandler, model: str,
-                                convert_hunks_to_line_numbers: bool) -> Tuple[list, list, list]:
+                                convert_hunks_to_line_numbers: bool) -> Tuple[list, list, list, list]:
    """
    Generate a compressed diff string for a pull request, using diff minimization techniques to reduce the number of
    tokens used.
@ -148,6 +153,7 @@ def pr_generate_compressed_diff(top_langs: list, token_handler: TokenHandler, mo
    """

    patches = []
+    added_files_list = []
    modified_files_list = []
    deleted_files_list = []
    # sort each one of the languages in top_langs by the number of tokens in the diff
@ -165,7 +171,7 @@ def pr_generate_compressed_diff(top_langs: list, token_handler: TokenHandler, mo

        # removing delete-only hunks
        patch = handle_patch_deletions(patch, original_file_content_str,
-                                       new_file_content_str, file.filename)
+                                       new_file_content_str, file.filename, file.edit_type)
        if patch is None:
            if not deleted_files_list:
                total_tokens += token_handler.count_tokens(DELETED_FILES_)
@ -179,21 +185,26 @@ def pr_generate_compressed_diff(top_langs: list, token_handler: TokenHandler, mo
        new_patch_tokens = token_handler.count_tokens(patch)

        # Hard Stop, no more tokens
-        if total_tokens > MAX_TOKENS[model] - OUTPUT_BUFFER_TOKENS_HARD_THRESHOLD:
+        if total_tokens > get_max_tokens(model) - OUTPUT_BUFFER_TOKENS_HARD_THRESHOLD:
            get_logger().warning(f"File was fully skipped, no more tokens: {file.filename}.")
            continue

        # If the patch is too large, just show the file name
-        if total_tokens + new_patch_tokens > MAX_TOKENS[model] - OUTPUT_BUFFER_TOKENS_SOFT_THRESHOLD:
+        if total_tokens + new_patch_tokens > get_max_tokens(model) - OUTPUT_BUFFER_TOKENS_SOFT_THRESHOLD:
            # Current logic is to skip the patch if it's too large
            # TODO: Option for alternative logic to remove hunks from the patch to reduce the number of tokens
            #  until we meet the requirements
            if get_settings().config.verbosity_level >= 2:
                get_logger().warning(f"Patch too large, minimizing it, {file.filename}")
-            if not modified_files_list:
-                total_tokens += token_handler.count_tokens(MORE_MODIFIED_FILES_)
-            modified_files_list.append(file.filename)
-            total_tokens += token_handler.count_tokens(file.filename) + 1
+            if file.edit_type == EDIT_TYPE.ADDED:
+                if not added_files_list:
+                    total_tokens += token_handler.count_tokens(ADDED_FILES_)
+                added_files_list.append(file.filename)
+            else:
+                if not modified_files_list:
+                    total_tokens += token_handler.count_tokens(MORE_MODIFIED_FILES_)
+                modified_files_list.append(file.filename)
+                total_tokens += token_handler.count_tokens(file.filename) + 1
            continue

        if patch:
@ -206,7 +217,7 @@ def pr_generate_compressed_diff(top_langs: list, token_handler: TokenHandler, mo
            if get_settings().config.verbosity_level >= 2:
                get_logger().info(f"Tokens: {total_tokens}, last filename: {file.filename}")

-    return patches, modified_files_list, deleted_files_list
+    return patches, modified_files_list, deleted_files_list, added_files_list


 async def retry_with_fallback_models(f: Callable):
@ -271,7 +282,7 @@ def find_line_number_of_relevant_line_in_file(diff_files: List[FilePatchInfo],
        r"^@@ -(\d+)(?:,(\d+))? \+(\d+)(?:,(\d+))? @@[ ]?(.*)")

    for file in diff_files:
-        if file.filename.strip() == relevant_file:
+        if file.filename and (file.filename.strip() == relevant_file):
            patch = file.patch
            patch_lines = patch.splitlines()

@ -397,13 +408,13 @@ def get_pr_multi_diffs(git_provider: GitProvider,
            continue

        # Remove delete-only hunks
-        patch = handle_patch_deletions(patch, original_file_content_str, new_file_content_str, file.filename)
+        patch = handle_patch_deletions(patch, original_file_content_str, new_file_content_str, file.filename, file.edit_type)
        if patch is None:
            continue

        patch = convert_to_hunks_with_lines_numbers(patch, file)
        new_patch_tokens = token_handler.count_tokens(patch)
-        if patch and (total_tokens + new_patch_tokens > MAX_TOKENS[model] - OUTPUT_BUFFER_TOKENS_SOFT_THRESHOLD):
+        if patch and (total_tokens + new_patch_tokens > get_max_tokens(model) - OUTPUT_BUFFER_TOKENS_SOFT_THRESHOLD):
            final_diff = "\n".join(patches)
            final_diff_list.append(final_diff)
            patches = []
--- a/pr_agent/algo/utils.py
+++ b/pr_agent/algo/utils.py
@ -9,6 +9,8 @@ from typing import Any, List

 import yaml
 from starlette_context import context
+
+from pr_agent.algo import MAX_TOKENS
 from pr_agent.config_loader import get_settings, global_settings
 from pr_agent.log import get_logger

@ -280,26 +282,43 @@ def _fix_key_value(key: str, value: str):
    try:
        value = yaml.safe_load(value)
    except Exception as e:
-        get_logger().error(f"Failed to parse YAML for config override {key}={value}", exc_info=e)
+        get_logger().debug(f"Failed to parse YAML for config override {key}={value}", exc_info=e)
    return key, value


-def load_yaml(review_text: str) -> dict:
-    review_text = review_text.removeprefix('```yaml').rstrip('`')
+def load_yaml(response_text: str) -> dict:
+    response_text = response_text.removeprefix('```yaml').rstrip('`')
    try:
-        data = yaml.safe_load(review_text)
+        data = yaml.safe_load(response_text)
    except Exception as e:
        get_logger().error(f"Failed to parse AI prediction: {e}")
-        data = try_fix_yaml(review_text)
+        data = try_fix_yaml(response_text)
    return data

-def try_fix_yaml(review_text: str) -> dict:
-    review_text_lines = review_text.split('\n')
+def try_fix_yaml(response_text: str) -> dict:
+    response_text_lines = response_text.split('\n')
+
+    keys = ['relevant line:', 'suggestion content:', 'relevant file:']
+    # first fallback - try to convert 'relevant line: ...' to relevant line: |-\n        ...'
+    response_text_lines_copy = response_text_lines.copy()
+    for i in range(0, len(response_text_lines_copy)):
+        for key in keys:
+            if key in response_text_lines_copy[i] and not '|-' in response_text_lines_copy[i]:
+                response_text_lines_copy[i] = response_text_lines_copy[i].replace(f'{key}',
+                                                                                  f'{key} |-\n        ')
+    try:
+        data = yaml.safe_load('\n'.join(response_text_lines_copy))
+        get_logger().info(f"Successfully parsed AI prediction after adding |-\n")
+        return data
+    except:
+        get_logger().info(f"Failed to parse AI prediction after adding |-\n")
+
+    # second fallback - try to remove last lines
    data = {}
-    for i in range(1, len(review_text_lines)):
-        review_text_lines_tmp = '\n'.join(review_text_lines[:-i])
+    for i in range(1, len(response_text_lines)):
+        response_text_lines_tmp = '\n'.join(response_text_lines[:-i])
        try:
-            data = yaml.load(review_text_lines_tmp, Loader=yaml.SafeLoader)
+            data = yaml.safe_load(response_text_lines_tmp,)
            get_logger().info(f"Successfully parsed AI prediction after removing {i} lines")
            break
        except:
@ -324,3 +343,35 @@ def set_custom_labels(variables):
        final_labels += f"      - {k} ({v['description']})\n"
    variables["custom_labels"] = final_labels
    variables["custom_labels_examples"] = f"      - {list(labels.keys())[0]}"
+
+
+def get_user_labels(current_labels: List[str] = None):
+    """
+    Only keep labels that has been added by the user
+    """
+    try:
+        if current_labels is None:
+            current_labels = []
+        user_labels = []
+        for label in current_labels:
+            if label.lower() in ['bug fix', 'tests', 'refactoring', 'enhancement', 'documentation', 'other']:
+                continue
+            if get_settings().config.enable_custom_labels:
+                if label in get_settings().custom_labels:
+                    continue
+            user_labels.append(label)
+        if user_labels:
+            get_logger().info(f"Keeping user labels: {user_labels}")
+    except Exception as e:
+        get_logger().exception(f"Failed to get user labels: {e}")
+        return current_labels
+    return user_labels
+
+
+def get_max_tokens(model):
+    settings = get_settings()
+    max_tokens_model = MAX_TOKENS[model]
+    if settings.config.max_model_tokens:
+        max_tokens_model = min(settings.config.max_model_tokens, max_tokens_model)
+        # get_logger().debug(f"limiting max tokens to {max_tokens_model}")
+    return max_tokens_model
--- a/pr_agent/cli.py
+++ b/pr_agent/cli.py
@ -8,6 +8,8 @@ from pr_agent.log import setup_logger

 setup_logger()

+
+
 def run(inargs=None):
    parser = argparse.ArgumentParser(description='AI based pull request analyzer', usage=
 """\
@ -51,9 +53,9 @@ For example: 'python cli.py --pr_url=... review --pr_reviewer.extra_instructions
    command = args.command.lower()
    get_settings().set("CONFIG.CLI_MODE", True)
    if args.issue_url:
-        result = asyncio.run(PRAgent().handle_request(args.issue_url, command + " " + " ".join(args.rest)))
+        result = asyncio.run(PRAgent().handle_request(args.issue_url, [command] + args.rest))
    else:
-        result = asyncio.run(PRAgent().handle_request(args.pr_url, command + " " + " ".join(args.rest)))
+        result = asyncio.run(PRAgent().handle_request(args.pr_url, [command] + args.rest))
    if not result:
        parser.print_help()

--- a/pr_agent/git_providers/bitbucket_provider.py
+++ b/pr_agent/git_providers/bitbucket_provider.py
@ -9,7 +9,7 @@ from starlette_context import context
 from ..algo.pr_processing import find_line_number_of_relevant_line_in_file
 from ..config_loader import get_settings
 from ..log import get_logger
-from .git_provider import FilePatchInfo, GitProvider
+from .git_provider import FilePatchInfo, GitProvider, EDIT_TYPE


 class BitbucketProvider(GitProvider):
@ -32,8 +32,10 @@ class BitbucketProvider(GitProvider):
        self.repo = None
        self.pr_num = None
        self.pr = None
+        self.pr_url = pr_url
        self.temp_comments = []
        self.incremental = incremental
+        self.diff_files = None
        if pr_url:
            self.set_pr(pr_url)
        self.bitbucket_comment_api_url = self.pr._BitbucketBase__data["links"]["comments"]["href"]
@ -41,9 +43,12 @@ class BitbucketProvider(GitProvider):

    def get_repo_settings(self):
        try:
-            contents = self.repo_obj.get_contents(
-                ".pr_agent.toml", ref=self.pr.head.sha
-            ).decoded_content
+            url = (f"https://api.bitbucket.org/2.0/repositories/{self.workspace_slug}/{self.repo_slug}/src/"
+                   f"{self.pr.destination_branch}/.pr_agent.toml")
+            response = requests.request("GET", url, headers=self.headers)
+            if response.status_code == 404:  # not found
+                return ""
+            contents = response.text.encode('utf-8')
            return contents
        except Exception:
            return ""
@ -113,6 +118,9 @@ class BitbucketProvider(GitProvider):
        return [diff.new.path for diff in self.pr.diffstat()]

    def get_diff_files(self) -> list[FilePatchInfo]:
+        if self.diff_files:
+            return self.diff_files
+
        diffs = self.pr.diffstat()
        diff_split = [
            "diff --git%s" % x for x in self.pr.diff().split("diff --git") if x.strip()
@ -124,16 +132,56 @@ class BitbucketProvider(GitProvider):
                diff.old.get_data("links")
            )
            new_file_content_str = self._get_pr_file_content(diff.new.get_data("links"))
-            diff_files.append(
-                FilePatchInfo(
-                    original_file_content_str,
-                    new_file_content_str,
-                    diff_split[index],
-                    diff.new.path,
-                )
+            file_patch_canonic_structure = FilePatchInfo(
+                original_file_content_str,
+                new_file_content_str,
+                diff_split[index],
+                diff.new.path,
            )
+
+            if diff.data['status'] == 'added':
+                file_patch_canonic_structure.edit_type = EDIT_TYPE.ADDED
+            elif diff.data['status'] == 'removed':
+                file_patch_canonic_structure.edit_type = EDIT_TYPE.DELETED
+            elif diff.data['status'] == 'modified':
+                file_patch_canonic_structure.edit_type = EDIT_TYPE.MODIFIED
+            elif diff.data['status'] == 'renamed':
+                file_patch_canonic_structure.edit_type = EDIT_TYPE.RENAMED
+            diff_files.append(file_patch_canonic_structure)
+
+
+        self.diff_files = diff_files
        return diff_files

+    def get_latest_commit_url(self):
+        return self.pr.data['source']['commit']['links']['html']['href']
+
+    def get_comment_url(self, comment):
+        return comment.data['links']['html']['href']
+
+    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool = True):
+        try:
+            for comment in self.pr.comments():
+                body = comment.raw
+                if initial_header in body:
+                    latest_commit_url = self.get_latest_commit_url()
+                    comment_url = self.get_comment_url(comment)
+                    if update_header:
+                        updated_header = f"{initial_header}\n\n### (review updated until commit {latest_commit_url})\n"
+                        pr_comment_updated = pr_comment.replace(initial_header, updated_header)
+                    else:
+                        pr_comment_updated = pr_comment
+                    get_logger().info(f"Persistent mode- updating comment {comment_url} to latest review message")
+                    d = {"content": {"raw": pr_comment_updated}}
+                    response = comment._update_data(comment.put(None, data=d))
+                    self.publish_comment(
+                        f"**[Persistent review]({comment_url})** updated to latest commit {latest_commit_url}")
+                    return
+        except Exception as e:
+            get_logger().exception(f"Failed to update persistent review, error: {e}")
+            pass
+        self.publish_comment(pr_comment)
+
    def publish_comment(self, pr_comment: str, is_temporary: bool = False):
        comment = self.pr.comment(pr_comment)
        if is_temporary:
@ -180,9 +228,29 @@ class BitbucketProvider(GitProvider):
        )
        return response

+    def generate_link_to_relevant_line_number(self, suggestion) -> str:
+        try:
+            relevant_file = suggestion['relevant file'].strip('`').strip("'")
+            relevant_line_str = suggestion['relevant line']
+            if not relevant_line_str:
+                return ""
+
+            diff_files = self.get_diff_files()
+            position, absolute_position = find_line_number_of_relevant_line_in_file \
+                (diff_files, relevant_file, relevant_line_str)
+
+            if absolute_position != -1 and self.pr_url:
+                link = f"{self.pr_url}/#L{relevant_file}T{absolute_position}"
+                return link
+        except Exception as e:
+            if get_settings().config.verbosity_level >= 2:
+                get_logger().info(f"Failed adding line link, error: {e}")
+
+        return ""
+
    def publish_inline_comments(self, comments: list[dict]):
        for comment in comments:
-            self.publish_inline_comment(comment['body'], comment['start_line'], comment['path'])
+            self.publish_inline_comment(comment['body'], comment['position'], comment['path'])

    def get_title(self):
        return self.pr.title
@ -259,6 +327,11 @@ class BitbucketProvider(GitProvider):
            })

        response = requests.request("PUT", self.bitbucket_pull_request_api_url, headers=self.headers, data=payload)
+        try:
+            if response.status_code != 200:
+                get_logger().info(f"Failed to update description, error code: {response.status_code}")
+        except:
+            pass
        return response

    # bitbucket does not support labels
--- a/pr_agent/git_providers/git_provider.py
+++ b/pr_agent/git_providers/git_provider.py
@ -13,6 +13,7 @@ class EDIT_TYPE(Enum):
    DELETED = 2
    MODIFIED = 3
    RENAMED = 4
+    UNKNOWN = 5


@dataclass
@ -22,7 +23,7 @@ class FilePatchInfo:
    patch: str
    filename: str
    tokens: int = -1
-    edit_type: EDIT_TYPE = EDIT_TYPE.MODIFIED
+    edit_type: EDIT_TYPE = EDIT_TYPE.UNKNOWN
    old_filename: str = None


@ -39,42 +40,10 @@ class GitProvider(ABC):
    def publish_description(self, pr_title: str, pr_body: str):
        pass

-    @abstractmethod
-    def publish_comment(self, pr_comment: str, is_temporary: bool = False):
-        pass
-
-    @abstractmethod
-    def publish_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
-        pass
-
-    @abstractmethod
-    def create_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
-        pass
-
-    @abstractmethod
-    def publish_inline_comments(self, comments: list[dict]):
-        pass
-
    @abstractmethod
    def publish_code_suggestions(self, code_suggestions: list) -> bool:
        pass

-    @abstractmethod
-    def publish_labels(self, labels):
-        pass
-
-    @abstractmethod
-    def get_labels(self):
-        pass
-
-    @abstractmethod
-    def remove_initial_comment(self):
-        pass
-
-    @abstractmethod
-    def remove_comment(self, comment):
-        pass
-
    @abstractmethod
    def get_languages(self):
        pass
@ -94,16 +63,16 @@ class GitProvider(ABC):
    def get_pr_description(self, *, full: bool = True) -> str:
        from pr_agent.config_loader import get_settings
        from pr_agent.algo.pr_processing import clip_tokens
-        max_tokens = get_settings().get("CONFIG.MAX_DESCRIPTION_TOKENS", None)
+        max_tokens_description = get_settings().get("CONFIG.MAX_DESCRIPTION_TOKENS", None)
        description = self.get_pr_description_full() if full else self.get_user_description()
-        if max_tokens:
-            return clip_tokens(description, max_tokens)
+        if max_tokens_description:
+            return clip_tokens(description, max_tokens_description)
        return description

    def get_user_description(self) -> str:
        description = (self.get_pr_description_full() or "").strip()
        # if the existing description wasn't generated by the pr-agent, just return it as-is
-        if not description.startswith("## PR Type"):
+        if not any(description.startswith(header) for header in ("## PR Type", "## PR Description")):
            return description
        # if the existing description was generated by the pr-agent, but it doesn't contain the user description,
        # return nothing (empty string) because it means there is no user description
@ -113,11 +82,54 @@ class GitProvider(ABC):
        return description.split("## User Description:", 1)[1].strip()

    @abstractmethod
-    def get_issue_comments(self):
+    def get_repo_settings(self):
+        pass
+
+    def get_pr_id(self):
+        return ""
+
+    #### comments operations ####
+    @abstractmethod
+    def publish_comment(self, pr_comment: str, is_temporary: bool = False):
+        pass
+
+    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool):
+        self.publish_comment(pr_comment)
+
+    @abstractmethod
+    def publish_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
        pass

    @abstractmethod
-    def get_repo_settings(self):
+    def create_inline_comment(self, body: str, relevant_file: str, relevant_line_in_file: str):
+        pass
+
+    @abstractmethod
+    def publish_inline_comments(self, comments: list[dict]):
+        pass
+
+    @abstractmethod
+    def remove_initial_comment(self):
+        pass
+
+    @abstractmethod
+    def remove_comment(self, comment):
+        pass
+
+    @abstractmethod
+    def get_issue_comments(self):
+        pass
+
+    def get_comment_url(self, comment) -> str:
+        return ""
+
+    #### labels operations ####
+    @abstractmethod
+    def publish_labels(self, labels):
+        pass
+
+    @abstractmethod
+    def get_labels(self):
        pass

    @abstractmethod
@ -128,11 +140,12 @@ class GitProvider(ABC):
    def remove_reaction(self, issue_comment_id: int, reaction_id: int) -> bool:
        pass

+    #### commits operations ####
    @abstractmethod
    def get_commit_messages(self):
        pass

-    def get_pr_id(self):
+    def get_latest_commit_url(self) -> str:
        return ""

 def get_main_pr_language(languages, files) -> str:
@ -143,6 +156,9 @@ def get_main_pr_language(languages, files) -> str:
    if not languages:
        get_logger().info("No languages detected")
        return main_language_str
+    if not files:
+        get_logger().info("No files in diff")
+        return main_language_str

    try:
        top_language = max(languages, key=languages.get).lower()
@ -150,6 +166,8 @@ def get_main_pr_language(languages, files) -> str:
        # validate that the specific commit uses the main language
        extension_list = []
        for file in files:
+            if not file:
+                continue
            if isinstance(file, str):
                file = FilePatchInfo(base_file=None, head_file=None, patch=None, filename=file)
            extension_list.append(file.filename.rsplit('.')[-1])
@ -187,6 +205,13 @@ class IncrementalPR:
    def __init__(self, is_incremental: bool = False):
        self.is_incremental = is_incremental
        self.commits_range = None
-        self.first_new_commit_sha = None
-        self.last_seen_commit_sha = None
+        self.first_new_commit = None
+        self.last_seen_commit = None

+    @property
+    def first_new_commit_sha(self):
+        return None if self.first_new_commit is None else self.first_new_commit.sha
+
+    @property
+    def last_seen_commit_sha(self):
+        return None if self.last_seen_commit is None else self.last_seen_commit.sha
--- a/pr_agent/git_providers/github_provider.py
+++ b/pr_agent/git_providers/github_provider.py
@ -13,7 +13,7 @@ from ..algo.utils import load_large_diff
 from ..config_loader import get_settings
 from ..log import get_logger
 from ..servers.utils import RateLimitExceeded
-from .git_provider import FilePatchInfo, GitProvider, IncrementalPR
+from .git_provider import FilePatchInfo, GitProvider, IncrementalPR, EDIT_TYPE


 class GithubProvider(GitProvider):
@ -66,10 +66,10 @@ class GithubProvider(GitProvider):
        first_new_commit_index = None
        for index in range(len(self.commits) - 1, -1, -1):
            if self.commits[index].commit.author.date > last_review_time:
-                self.incremental.first_new_commit_sha = self.commits[index].sha
+                self.incremental.first_new_commit = self.commits[index]
                first_new_commit_index = index
            else:
-                self.incremental.last_seen_commit_sha = self.commits[index].sha
+                self.incremental.last_seen_commit = self.commits[index]
                break
        return self.commits[first_new_commit_index:] if first_new_commit_index is not None else []

@ -129,7 +129,20 @@ class GithubProvider(GitProvider):
                    if not patch:
                        patch = load_large_diff(file.filename, new_file_content_str, original_file_content_str)

-                diff_files.append(FilePatchInfo(original_file_content_str, new_file_content_str, patch, file.filename))
+                if file.status == 'added':
+                    edit_type = EDIT_TYPE.ADDED
+                elif file.status == 'removed':
+                    edit_type = EDIT_TYPE.DELETED
+                elif file.status == 'renamed':
+                    edit_type = EDIT_TYPE.RENAMED
+                elif file.status == 'modified':
+                    edit_type = EDIT_TYPE.MODIFIED
+                else:
+                    get_logger().error(f"Unknown edit type: {file.status}")
+                    edit_type = EDIT_TYPE.UNKNOWN
+                file_patch_canonical_structure = FilePatchInfo(original_file_content_str, new_file_content_str, patch,
+                                                               file.filename, edit_type=edit_type)
+                diff_files.append(file_patch_canonical_structure)

            self.diff_files = diff_files
            return diff_files
@ -141,10 +154,36 @@ class GithubProvider(GitProvider):
    def publish_description(self, pr_title: str, pr_body: str):
        self.pr.edit(title=pr_title, body=pr_body)

+    def get_latest_commit_url(self) -> str:
+        return self.last_commit_id.html_url
+
+    def get_comment_url(self, comment) -> str:
+        return comment.html_url
+
+    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool = True):
+        prev_comments = list(self.pr.get_issue_comments())
+        for comment in prev_comments:
+            body = comment.body
+            if body.startswith(initial_header):
+                latest_commit_url = self.get_latest_commit_url()
+                comment_url = self.get_comment_url(comment)
+                if update_header:
+                    updated_header = f"{initial_header}\n\n### (review updated until commit {latest_commit_url})\n"
+                    pr_comment_updated = pr_comment.replace(initial_header, updated_header)
+                else:
+                    pr_comment_updated = pr_comment
+                get_logger().info(f"Persistent mode- updating comment {comment_url} to latest review message")
+                response = comment.edit(pr_comment_updated)
+                self.publish_comment(
+                    f"**[Persistent review]({comment_url})** updated to latest commit {latest_commit_url}")
+                return
+        self.publish_comment(pr_comment)
+
    def publish_comment(self, pr_comment: str, is_temporary: bool = False):
        if is_temporary and not get_settings().config.publish_output_progress:
            get_logger().debug(f"Skipping publish_comment for temporary comment: {pr_comment}")
            return
+
        response = self.pr.create_issue_comment(pr_comment)
        if hasattr(response, "user") and hasattr(response.user, "login"):
            self.github_user_id = response.user.login
@ -366,7 +405,7 @@ class GithubProvider(GitProvider):
                raise ValueError("GitHub app installation ID is required when using GitHub app deployment")
            auth = AppAuthentication(app_id=app_id, private_key=private_key,
                                     installation_id=self.installation_id)
-            return Github(app_auth=auth)
+            return Github(app_auth=auth, base_url=get_settings().github.base_url)

        if deployment_type == 'user':
            try:
@ -375,7 +414,7 @@ class GithubProvider(GitProvider):
                raise ValueError(
                    "GitHub token is required when using user deployment. See: "
                    "https://github.com/Codium-ai/pr-agent#method-2-run-from-source") from e
-            return Github(auth=Auth.Token(token))
+            return Github(auth=Auth.Token(token), base_url=get_settings().github.base_url)

    def _get_repo(self):
        if hasattr(self, 'repo_obj') and \
--- a/pr_agent/git_providers/gitlab_provider.py
+++ b/pr_agent/git_providers/gitlab_provider.py
@ -136,6 +136,33 @@ class GitLabProvider(GitProvider):
        except Exception as e:
            get_logger().exception(f"Could not update merge request {self.id_mr} description: {e}")

+    def get_latest_commit_url(self):
+        return self.mr.commits().next().web_url
+
+    def get_comment_url(self, comment):
+        return f"{self.mr.web_url}#note_{comment.id}"
+
+    def publish_persistent_comment(self, pr_comment: str, initial_header: str, update_header: bool = True):
+        try:
+            for comment in self.mr.notes.list(get_all=True)[::-1]:
+                if comment.body.startswith(initial_header):
+                    latest_commit_url = self.get_latest_commit_url()
+                    comment_url = self.get_comment_url(comment)
+                    if update_header:
+                        updated_header = f"{initial_header}\n\n### (review updated until commit {latest_commit_url})\n"
+                        pr_comment_updated = pr_comment.replace(initial_header, updated_header)
+                    else:
+                        pr_comment_updated = pr_comment
+                    get_logger().info(f"Persistent mode- updating comment {comment_url} to latest review message")
+                    response = self.mr.notes.update(comment.id, {'body': pr_comment_updated})
+                    self.publish_comment(
+                        f"**[Persistent review]({comment_url})** updated to latest commit {latest_commit_url}")
+                    return
+        except Exception as e:
+            get_logger().exception(f"Failed to update persistent review, error: {e}")
+            pass
+        self.publish_comment(pr_comment)
+
    def publish_comment(self, mr_comment: str, is_temporary: bool = False):
        comment = self.mr.notes.create({'body': mr_comment})
        if is_temporary:
--- a/pr_agent/git_providers/utils.py
+++ b/pr_agent/git_providers/utils.py
@ -27,7 +27,8 @@ def apply_repo_settings(pr_url):
                    get_settings().unset(section)
                    get_settings().set(section, section_dict, merge=False)
                    get_logger().info(f"Applying repo settings for section {section}, contents: {contents}")
-
+        except Exception as e:
+            get_logger().exception("Failed to apply repo settings", e)
        finally:
            if repo_settings_file:
                try:
--- a/pr_agent/servers/github_action_runner.py
+++ b/pr_agent/servers/github_action_runner.py
@ -65,13 +65,13 @@ async def run_action():
        if action in ["opened", "reopened"]:
            pr_url = event_payload.get("pull_request", {}).get("url")
            if pr_url:
-                auto_review = os.environ.get('github_action.auto_review', None)
+                auto_review = get_settings().get('GITHUB_ACTION.AUTO_REVIEW', None)
                if auto_review is None or (isinstance(auto_review, str) and auto_review.lower() == 'true'):
                    await PRReviewer(pr_url).run()
-                auto_describe = os.environ.get('github_action.auto_describe', None)
+                auto_describe = get_settings().get('GITHUB_ACTION.AUTO_DESCRIBE', None)
                if isinstance(auto_describe, str) and auto_describe.lower() == 'true':
                    await PRDescription(pr_url).run()
-                auto_improve = os.environ.get('github_action.auto_improve', None)
+                auto_improve = get_settings().get('GITHUB_ACTION.AUTO_IMPROVE', None)
                if isinstance(auto_improve, str) and auto_improve.lower() == 'true':
                    await PRCodeSuggestions(pr_url).run()

--- a/pr_agent/servers/github_app.py
+++ b/pr_agent/servers/github_app.py
@ -122,7 +122,7 @@ async def handle_request(body: Dict[str, Any], event: str):
                if body.get("requested_reviewer", {}).get("login", "") != bot_user:
                    return {}
            get_logger().info(f"Performing review for {api_url=} because of {event=} and {action=}")
-            await _perform_commands(get_settings().github_app.pr_commands, agent, body, api_url, log_context)
+            await _perform_commands("pr_commands", agent, body, api_url, log_context)

    # handle pull_request event with synchronize action - "push trigger" for new commits
    elif event == 'pull_request' and action == 'synchronize' and get_settings().github_app.handle_push_trigger:
@ -174,7 +174,7 @@ async def handle_request(body: Dict[str, Any], event: str):
                get_logger().info(f"Skipping incremental review because there was no initial review for {api_url=} yet")
                return {}
            get_logger().info(f"Performing incremental review for {api_url=} because of {event=} and {action=}")
-            await _perform_commands(get_settings().github_app.push_commands, agent, body, api_url, log_context)
+            await _perform_commands("push_commands", agent, body, api_url, log_context)

        finally:
            # release the waiting task block
@ -203,8 +203,9 @@ def _check_pull_request_event(action: str, body: dict, log_context: dict, bot_us
    return pull_request, api_url


-async def _perform_commands(commands: List[str], agent: PRAgent, body: dict, api_url: str, log_context: dict):
+async def _perform_commands(commands_conf: str, agent: PRAgent, body: dict, api_url: str, log_context: dict):
    apply_repo_settings(api_url)
+    commands = get_settings().get(f"github_app.{commands_conf}")
    for command in commands:
        split_command = command.split(" ")
        command = split_command[0]
--- a/pr_agent/servers/gitlab_webhook.py
+++ b/pr_agent/servers/gitlab_webhook.py
@ -38,7 +38,7 @@ async def gitlab_webhook(background_tasks: BackgroundTasks, request: Request):
        try:
            secret_dict = json.loads(secret)
            gitlab_token = secret_dict["gitlab_token"]
-            log_context["sender"] = secret_dict["id"]
+            log_context["sender"] = secret_dict.get("token_name", secret_dict.get("id", "unknown"))
            context["settings"] = copy.deepcopy(global_settings)
            context["settings"].gitlab.personal_access_token = gitlab_token
        except Exception as e:
--- a/pr_agent/servers/help.py
+++ b/pr_agent/servers/help.py
@ -1,12 +1,14 @@
-commands_text = "> **/review [-i]**: Request a review of your Pull Request. For an incremental review, which only " \
-                "considers changes since the last review, include the '-i' option.\n" \
-                "> **/describe**: Modify the PR title and description based on the contents of the PR.\n" \
-                "> **/improve [--extended]**: Suggest improvements to the code in the PR. Extended mode employs several calls, and provides a more thorough feedback. \n" \
-                "> **/ask \\<QUESTION\\>**: Pose a question about the PR.\n" \
-                "> **/update_changelog**: Update the changelog based on the PR's contents.\n\n" \
-                ">To edit any configuration parameter from **configuration.toml**, add --config_path=new_value\n" \
+commands_text = "> **/review**: Request a review of your Pull Request.\n" \
+                "> **/describe**: Update the PR title and description based on the contents of the PR.\n" \
+                "> **/improve [--extended]**: Suggest code improvements. Extended mode provides a higher quality feedback.\n" \
+                "> **/ask \\<QUESTION\\>**: Ask a question about the PR.\n" \
+                "> **/update_changelog**: Update the changelog based on the PR's contents.\n" \
+                "> **/add_docs**: Generate docstring for new components introduced in the PR.\n" \
+                "> **/generate_labels**: Generate labels for the PR based on the PR's contents.\n" \
+                "> see the [tools guide](https://github.com/Codium-ai/pr-agent/blob/main/docs/TOOLS_GUIDE.md) for more details.\n\n" \
+                ">To edit any configuration parameter from the [configuration.toml](https://github.com/Codium-ai/pr-agent/blob/main/pr_agent/settings/configuration.toml), add --config_path=new_value.\n" \
                ">For example: /review --pr_reviewer.extra_instructions=\"focus on the file: ...\" \n" \
-                ">To list the possible configuration parameters, use the **/config** command.\n" \
+                ">To list the possible configuration parameters, add a **/config** comment.\n" \


 def bot_help_text(user: str):
--- a/pr_agent/servers/serverless.py
+++ b/pr_agent/servers/serverless.py
@ -1,12 +1,13 @@
 from fastapi import FastAPI
 from mangum import Mangum
+from starlette.middleware import Middleware
+from starlette_context.middleware import RawContextMiddleware

-from pr_agent.log import setup_logger
 from pr_agent.servers.github_app import router

-setup_logger()

-app = FastAPI()
+middleware = [Middleware(RawContextMiddleware)]
+app = FastAPI(middleware=middleware)
 app.include_router(router)

 handler = Mangum(app, lifespan="off")
--- a/pr_agent/settings/.secrets_template.toml
+++ b/pr_agent/settings/.secrets_template.toml
@ -34,7 +34,11 @@ key = "" # Optional, uncomment if you want to use Huggingface Inference API. Acq
 api_base = "" # the base url for your huggingface inference endpoint 

 [ollama]
-api_base = "" # the base url for your huggingface inference endpoint 
+api_base = "" # the base url for your local Llama 2, Code Llama, and other models inference endpoint. Acquire through https://ollama.ai/
+
+[vertexai]
+vertex_project = "" # the google cloud platform project name for your vertexai deployment
+vertex_location = "" # the google cloud platform location for your vertexai deployment

 [github]
 # ---- Set the following only for deployment type == "user"
--- a/pr_agent/settings/configuration.toml
+++ b/pr_agent/settings/configuration.toml
@ -1,5 +1,5 @@
 [config]
-model="gpt-4"
+model="gpt-4" # "gpt-4-1106-preview"
 fallback_models=["gpt-3.5-turbo-16k"]
 git_provider="github"
 publish_output=true
@ -10,22 +10,33 @@ use_repo_settings_file=true
 ai_timeout=180
 max_description_tokens = 500
 max_commits_tokens = 500
+max_model_tokens = 32000 # Limits the maximum number of tokens that can be used by any model, regardless of the model's default capabilities.
 patch_extra_lines = 3
 secret_provider="google_cloud_storage"
 cli_mode=false

 [pr_reviewer] # /review #
+# enable/disable features
 require_focused_review=false
 require_score_review=false
 require_tests_review=true
 require_security_review=true
 require_estimate_effort_to_review=true
+# general options
 num_code_suggestions=4
 inline_code_comments = false
 ask_and_reflect=false
 automatic_review=true
 remove_previous_review_comment=false
+persistent_comment=true
 extra_instructions = ""
+# review labels
+enable_review_labels_security=true
+enable_review_labels_effort=false
+# specific configurations for incremental review (/review -i)
+require_all_thresholds_for_incremental_review=false
+minimal_commits_for_incremental_review=0
+minimal_minutes_for_incremental_review=0

 [pr_description] # /describe #
 publish_labels=true
@ -34,6 +45,7 @@ add_original_user_description=false
 keep_original_user_title=false
 use_bullet_points=true
 extra_instructions = ""
+enable_pr_type=true

 # markers
 use_description_markers=false
@ -67,6 +79,7 @@ extra_instructions = ""
 # The type of deployment to create. Valid values are 'app' or 'user'.
 deployment_type = "user"
 ratelimit_retries = 5
+base_url = "https://api.github.com"

 [github_action]
 # auto_review = true    # set as env var in .github/workflows/pr-agent.yaml
@ -105,6 +118,9 @@ push_commands = [
       --pr_reviewer.num_code_suggestions=0 \
       --pr_reviewer.inline_code_comments=false \
       --pr_reviewer.remove_previous_review_comment=true \
+       --pr_reviewer.require_all_thresholds_for_incremental_review=false \
+       --pr_reviewer.minimal_commits_for_incremental_review=5 \
+       --pr_reviewer.minimal_minutes_for_incremental_review=30 \
       --pr_reviewer.extra_instructions='' \
    """
 ]
--- a/pr_agent/settings/pr_code_suggestions_prompts.toml
+++ b/pr_agent/settings/pr_code_suggestions_prompts.toml
@ -90,16 +90,19 @@ Code suggestions:
 Example output:
 ```yaml
 Code suggestions:
-  - relevant file: |-
-        src/file1.py
-    suggestion content: |-
-        Add a docstring to func1()
-    existing code: |-
-        def func1():
-    relevant lines start: 12
-    relevant lines end: 12
-    improved code: |-
-        ...
+- relevant file: |-
+    src/file1.py
+  suggestion content: |-
+    Add a docstring to func1()
+  existing code: |-
+    def func1():
+  relevant lines start: |-
+    12
+  relevant lines end: |-
+    12
+  improved code: |-
+    ...
+...
 ```


--- a/pr_agent/settings/pr_custom_labels.toml
+++ b/pr_agent/settings/pr_custom_labels.toml
@ -16,7 +16,7 @@ You must use the following YAML schema to format your answer:
 PR Type:
  type: array
 {%- if enable_custom_labels %}
-  description: One or more labels that describe the PR type. Don't output the description in the parentheses.
+  description: Labels that are applicable to the Pull Request. Don't output the description in the parentheses. If none of the labels is relevant to the PR, output an empty array.
 {%- endif %}
  items:
    type: string
@ -39,7 +39,6 @@ PR Type:
 {{ custom_labels_examples }}
 {%- else %}
  - Bug fix
-  - Tests
 {%- endif %}
 ```

--- a/pr_agent/settings/pr_description_prompts.toml
+++ b/pr_agent/settings/pr_description_prompts.toml
@ -1,9 +1,10 @@
 [pr_description_prompt]
 system="""You are CodiumAI-PR-Reviewer, a language model designed to review git pull requests.
-Your task is to provide full description of the PR content.
- Make sure not to focus the new PR code (the '+' lines).
+Your task is to provide full description of a Pull Request (PR) content.
+- Make sure to focus on the new PR code (the '+' lines).
 - Notice that the 'Previous title', 'Previous description' and 'Commit messages' sections may be partial, simplistic, non-informative or not up-to-date. Hence, compare them to the PR diff code, and use them only as a reference.
-  If needed, each YAML output should be in block scalar format ('|-')
+- Emphasize first the most important changes, and then the less important ones.
+- If needed, each YAML output should be in block scalar format ('|-')
 {%- if extra_instructions %}

 Extra instructions from the user:
@ -18,22 +19,22 @@ PR Title:
  type: string
  description: an informative title for the PR, describing its main theme
 PR Type:
-  type: array
+  type: string
+  enum:
+    - Bug fix
+    - Tests
+    - Refactoring
+    - Enhancement
+    - Documentation
+    - Other
 {%- if enable_custom_labels %}
-  description: One or more labels that describe the PR type. Don't output the description in the parentheses.
-{%- endif %}
+PR Labels:
+  type: array
+  description: Labels that are applicable to the Pull Request. Don't output the description in the parentheses. If none of the labels is relevant to the PR, output an empty array.
  items:
    type: string
    enum:
-{%- if enable_custom_labels %}
 {{ custom_labels }}
-{%- else %}
-      - Bug fix
-      - Tests
-      - Refactoring
-      - Enhancement
-      - Documentation
-      - Other
 {%- endif %}
 PR Description:
  type: string
@ -51,6 +52,7 @@ PR Main Files Walkthrough:
    changes in file:
      type: string
      description: minimal and concise description of the changes in the relevant file
+```


 Example output:
@ -58,10 +60,11 @@ Example output:
 PR Title: |-
  ...
 PR Type:
+  ...
 {%- if enable_custom_labels %}
-{{ custom_labels_examples }}
-{%- else %}
-  - Bug fix
+PR Labels:
+- ...
+- ...
 {%- endif %}
 PR Description: |-
  ...
--- a/pr_agent/settings/pr_reviewer_prompts.toml
+++ b/pr_agent/settings/pr_reviewer_prompts.toml
@ -51,22 +51,13 @@ PR Analysis:
    description: summary of the PR in 2-3 sentences.
  Type of PR:
    type: string
-{%- if enable_custom_labels %}
-  description: One or more labels that describe the PR type. Don't output the description in the parentheses.
-{%- endif %}
-  items:
-    type: string
    enum:
-{%- if enable_custom_labels %}
-{{ custom_labels }}
-{%- else %}
      - Bug fix
      - Tests
      - Refactoring
      - Enhancement
      - Documentation
      - Other
-{%- endif %}
 {%- if require_score %}
  Score:
    type: int
@ -102,7 +93,7 @@ PR Analysis:
    description: >-
      Estimate, on a scale of 1-5 (inclusive), the time and effort required to review this PR by an experienced and knowledgeable developer. 1 means short and easy review , 5 means long and hard review.
      Take into account the size, complexity, quality, and the needed changes of the PR code diff.
-      Explain your answer shortly (1-2 sentences).
+      Explain your answer shortly (1-2 sentences). Use the format: '1, because ...'
 {%- endif %}
 PR Feedback:
  General suggestions:
@ -139,7 +130,8 @@ PR Feedback:
  Security concerns:
    type: string
    description: >-
-      yes\\no question: does this PR code introduce possible vulnerabilities such as exposure of sensitive information (e.g., API keys, secrets, passwords), or security concerns like SQL injection, XSS, CSRF, and others ? If answered 'yes', explain your answer briefly.
+      does this PR code introduce possible vulnerabilities such as exposure of sensitive information (e.g., API keys, secrets, passwords), or security concerns like SQL injection, XSS, CSRF, and others ? Answer 'No' if there are no possible issues.
+      Answer 'Yes, because ...' if there are security concerns or issues. Explain your answer shortly.
 {%- endif %}
 ```

@ -151,7 +143,7 @@ PR Analysis:
  PR summary: |-
    xxx
  Type of PR: |-
-    Bug fix
+    ...
 {%- if require_score %}
  Score: 89
 {%- endif %}
@ -161,7 +153,8 @@ PR Analysis:
  Focused PR: no, because ...
 {%- endif %}
 {%- if require_estimate_effort_to_review %}
-  Estimated effort to review [1-5]: 3, because ...
+  Estimated effort to review [1-5]: |-
+    3, because ...
 {%- endif %}
 PR Feedback:
  General PR suggestions: |-
--- a/pr_agent/tools/pr_description.py
+++ b/pr_agent/tools/pr_description.py
@ -7,7 +7,7 @@ from jinja2 import Environment, StrictUndefined
 from pr_agent.algo.ai_handler import AiHandler
 from pr_agent.algo.pr_processing import get_pr_diff, retry_with_fallback_models
 from pr_agent.algo.token_handler import TokenHandler
-from pr_agent.algo.utils import load_yaml, set_custom_labels
+from pr_agent.algo.utils import load_yaml, set_custom_labels, get_user_labels
 from pr_agent.config_loader import get_settings
 from pr_agent.git_providers import get_git_provider
 from pr_agent.git_providers.git_provider import get_main_pr_language
@ -98,9 +98,9 @@ class PRDescription:
                    self.git_provider.publish_description(pr_title, pr_body)
                    if get_settings().pr_description.publish_labels and self.git_provider.is_supported("get_labels"):
                        current_labels = self.git_provider.get_labels()
-                        if current_labels is None:
-                            current_labels = []
-                        self.git_provider.publish_labels(pr_labels + current_labels)
+                        user_labels = get_user_labels(current_labels)
+
+                        self.git_provider.publish_labels(pr_labels + user_labels)
                self.git_provider.remove_initial_comment()
        except Exception as e:
            get_logger().error(f"Error generating PR description {self.pr_id}: {e}")
@ -158,6 +158,9 @@ class PRDescription:
            user=user_prompt
        )

+        if get_settings().config.verbosity_level >= 2:
+            get_logger().info(f"\nAI response:\n{response}")
+
        return response

    def _prepare_data(self):
@ -172,12 +175,16 @@ class PRDescription:
        pr_types = []

        # If the 'PR Type' key is present in the dictionary, split its value by comma and assign it to 'pr_types'
-        if 'PR Type' in self.data:
+        if 'PR Labels' in self.data:
+            if type(self.data['PR Labels']) == list:
+                pr_types = self.data['PR Labels']
+            elif type(self.data['PR Labels']) == str:
+                pr_types = self.data['PR Labels'].split(',')
+        elif 'PR Type' in self.data:
            if type(self.data['PR Type']) == list:
                pr_types = self.data['PR Type']
            elif type(self.data['PR Type']) == str:
                pr_types = self.data['PR Type'].split(',')
-
        return pr_types

    def _prepare_pr_answer_with_markers(self) -> Tuple[str, str]:
@ -223,6 +230,11 @@ class PRDescription:

        # Iterate over the dictionary items and append the key and value to 'markdown_text' in a markdown format
        markdown_text = ""
+        # Don't display 'PR Labels'
+        if 'PR Labels' in self.data and self.git_provider.is_supported("get_labels"):
+            self.data.pop('PR Labels')
+        if not get_settings().pr_description.enable_pr_type:
+            self.data.pop('PR Type')
        for key, value in self.data.items():
            markdown_text += f"## {key}\n\n"
            markdown_text += f"{value}\n\n"
@ -248,7 +260,7 @@ class PRDescription:
                for file in value:
                    filename = file['filename'].replace("'", "`")
                    description = file['changes in file']
-                    pr_body += f'`{filename}`: {description}\n'
+                    pr_body += f'- `{filename}`: {description}\n'
                if self.git_provider.is_supported("gfm_markdown"):
                    pr_body +="</details>\n"
            else:
--- a/pr_agent/tools/pr_generate_labels.py
+++ b/pr_agent/tools/pr_generate_labels.py
@ -7,7 +7,7 @@ from jinja2 import Environment, StrictUndefined
 from pr_agent.algo.ai_handler import AiHandler
 from pr_agent.algo.pr_processing import get_pr_diff, retry_with_fallback_models
 from pr_agent.algo.token_handler import TokenHandler
-from pr_agent.algo.utils import load_yaml, set_custom_labels
+from pr_agent.algo.utils import load_yaml, set_custom_labels, get_user_labels
 from pr_agent.config_loader import get_settings
 from pr_agent.git_providers import get_git_provider
 from pr_agent.git_providers.git_provider import get_main_pr_language
@ -82,11 +82,17 @@ class PRGenerateLabels:

            if get_settings().config.publish_output:
                get_logger().info(f"Pushing labels {self.pr_id}")
+
+                current_labels = self.git_provider.get_labels()
+                user_labels = get_user_labels(current_labels)
+                pr_labels = pr_labels + user_labels
+
                if self.git_provider.is_supported("get_labels"):
-                    current_labels = self.git_provider.get_labels()
-                    if current_labels is None:
-                        current_labels = []
-                    self.git_provider.publish_labels(pr_labels + current_labels)
+                    self.git_provider.publish_labels(pr_labels)
+                elif pr_labels:
+                    value = ', '.join(v for v in pr_labels)
+                    pr_labels_text = f"## PR Labels:\n{value}\n"
+                    self.git_provider.publish_comment(pr_labels_text, is_temporary=False)
                self.git_provider.remove_initial_comment()
        except Exception as e:
            get_logger().error(f"Error generating PR labels {self.pr_id}: {e}")
--- a/pr_agent/tools/pr_reviewer.py
+++ b/pr_agent/tools/pr_reviewer.py
@ -1,4 +1,5 @@
 import copy
+import datetime
 from collections import OrderedDict
 from typing import List, Tuple

@ -9,7 +10,7 @@ from yaml import SafeLoader
 from pr_agent.algo.ai_handler import AiHandler
 from pr_agent.algo.pr_processing import get_pr_diff, retry_with_fallback_models
 from pr_agent.algo.token_handler import TokenHandler
-from pr_agent.algo.utils import convert_to_markdown, load_yaml, try_fix_yaml, set_custom_labels
+from pr_agent.algo.utils import convert_to_markdown, load_yaml, try_fix_yaml, set_custom_labels, get_user_labels
 from pr_agent.config_loader import get_settings
 from pr_agent.git_providers import get_git_provider
 from pr_agent.git_providers.git_provider import IncrementalPR, get_main_pr_language
@ -100,8 +101,7 @@ class PRReviewer:
            if self.is_auto and not get_settings().pr_reviewer.automatic_review:
                get_logger().info(f'Automatic review is disabled {self.pr_url}')
                return None
-            if self.is_auto and self.incremental.is_incremental and not self.incremental.first_new_commit_sha:
-                get_logger().info(f"Incremental review is enabled for {self.pr_url} but there are no new commits")
+            if self.incremental.is_incremental and not self._can_run_incremental_review():
                return None

            get_logger().info(f'Reviewing PR: {self.pr_url} ...')
@ -117,7 +117,15 @@ class PRReviewer:
            if get_settings().config.publish_output:
                get_logger().info('Pushing PR review...')
                previous_review_comment = self._get_previous_review_comment()
-                self.git_provider.publish_comment(pr_comment)
+
+                # publish the review
+                if get_settings().pr_reviewer.persistent_comment and not self.incremental.is_incremental:
+                    self.git_provider.publish_persistent_comment(pr_comment,
+                                                                 initial_header="## PR Analysis",
+                                                                 update_header=True)
+                else:
+                    self.git_provider.publish_comment(pr_comment)
+
                self.git_provider.remove_initial_comment()
                if previous_review_comment:
                    self._remove_previous_review_comment(previous_review_comment)
@ -156,7 +164,6 @@ class PRReviewer:
        variables["diff"] = self.patches_diff  # update diff

        environment = Environment(undefined=StrictUndefined)
-        set_custom_labels(variables)
        system_prompt = environment.from_string(get_settings().pr_review_prompt.system).render(variables)
        user_prompt = environment.from_string(get_settings().pr_review_prompt.user).render(variables)

@ -171,6 +178,9 @@ class PRReviewer:
            user=user_prompt
        )

+        if get_settings().config.verbosity_level >= 2:
+            get_logger().info(f"\nAI response:\n{response}")
+
        return response

    def _prepare_pr_review(self) -> str:
@ -217,19 +227,6 @@ class PRReviewer:
                            suggestion['relevant line'] = f"[{suggestion['relevant line']}]({link})"
                    else:
                        pass
-                        # try:
-                        #     relevant_file = suggestion['relevant file'].strip('`').strip("'")
-                        #     relevant_line_str = suggestion['relevant line']
-                        #     if not relevant_line_str:
-                        #         return ""
-                        #
-                        #     position, absolute_position = find_line_number_of_relevant_line_in_file(
-                        #         self.git_provider.diff_files, relevant_file, relevant_line_str)
-                        #     if absolute_position != -1:
-                        #         suggestion[
-                        #             'relevant line'] = f"{suggestion['relevant line']} (line {absolute_position})"
-                        # except:
-                        #     pass


        # Add incremental review section
@ -239,7 +236,8 @@ class PRReviewer:
            last_commit_msg = self.incremental.commits_range[0].commit.message if self.incremental.commits_range else ""
            incremental_review_markdown_text = f"Starting from commit {last_commit_url}"
            if last_commit_msg:
-                incremental_review_markdown_text += f"  \n_({last_commit_msg.splitlines(keepends=False)[0]})_"
+                replacement = last_commit_msg.splitlines(keepends=False)[0].replace('_', r'\_')
+                incremental_review_markdown_text += f"  \n_({replacement})_"
            data = OrderedDict(data)
            data.update({'Incremental PR Review': {
                "⏮️ Review for commits since previous PR-Agent review": incremental_review_markdown_text}})
@ -251,11 +249,18 @@ class PRReviewer:
        # Add help text if not in CLI mode
        if not get_settings().get("CONFIG.CLI_MODE", False):
            markdown_text += "\n### How to use\n"
+            if self.git_provider.is_supported("gfm_markdown"):
+                markdown_text += "\n**<details><summary> Instructions**</summary>\n"
            bot_user = "[bot]" if get_settings().github_app.override_deployment_type else get_settings().github_app.bot_user
            if user and bot_user not in user:
                markdown_text += bot_help_text(user)
            else:
                markdown_text += actions_help_text
+            if self.git_provider.is_supported("gfm_markdown"):
+                markdown_text += "\n</details>\n"
+
+        # Add custom labels from the review prediction (effort, security)
+        self.set_review_labels(data)

        # Log markdown response if verbosity level is high
        if get_settings().config.verbosity_level >= 2:
@ -273,14 +278,7 @@ class PRReviewer:
        if get_settings().pr_reviewer.num_code_suggestions == 0:
            return

-        review_text = self.prediction.strip()
-        review_text = review_text.removeprefix('```yaml').rstrip('`')
-        try:
-            data = yaml.load(review_text, Loader=SafeLoader)
-        except Exception as e:
-            get_logger().error(f"Failed to parse AI prediction: {e}")
-            data = try_fix_yaml(review_text)
-
+        data = load_yaml(self.prediction.strip())
        comments: List[str] = []
        for suggestion in data.get('PR Feedback', {}).get('Code feedback', []):
            relevant_file = suggestion.get('relevant file', '').strip()
@ -346,3 +344,59 @@ class PRReviewer:
                self.git_provider.remove_comment(comment)
        except Exception as e:
            get_logger().exception(f"Failed to remove previous review comment, error: {e}")
+
+    def _can_run_incremental_review(self) -> bool:
+        """Checks if we can run incremental review according the various configurations and previous review"""
+        # checking if running is auto mode but there are no new commits
+        if self.is_auto and not self.incremental.first_new_commit_sha:
+            get_logger().info(f"Incremental review is enabled for {self.pr_url} but there are no new commits")
+            return False
+        # checking if there are enough commits to start the review
+        num_new_commits = len(self.incremental.commits_range)
+        num_commits_threshold = get_settings().pr_reviewer.minimal_commits_for_incremental_review
+        not_enough_commits = num_new_commits < num_commits_threshold
+        # checking if the commits are not too recent to start the review
+        recent_commits_threshold = datetime.datetime.now() - datetime.timedelta(
+            minutes=get_settings().pr_reviewer.minimal_minutes_for_incremental_review
+        )
+        last_seen_commit_date = (
+            self.incremental.last_seen_commit.commit.author.date if self.incremental.last_seen_commit else None
+        )
+        all_commits_too_recent = (
+            last_seen_commit_date > recent_commits_threshold if self.incremental.last_seen_commit else False
+        )
+        # check all the thresholds or just one to start the review
+        condition = any if get_settings().pr_reviewer.require_all_thresholds_for_incremental_review else all
+        if condition((not_enough_commits, all_commits_too_recent)):
+            get_logger().info(
+                f"Incremental review is enabled for {self.pr_url} but didn't pass the threshold check to run:"
+                f"\n* Number of new commits = {num_new_commits} (threshold is {num_commits_threshold})"
+                f"\n* Last seen commit date = {last_seen_commit_date} (threshold is {recent_commits_threshold})"
+            )
+            return False
+        return True
+
+    def set_review_labels(self, data):
+        if (get_settings().pr_reviewer.enable_review_labels_security or
+                get_settings().pr_reviewer.enable_review_labels_effort):
+            try:
+                review_labels = []
+                if get_settings().pr_reviewer.enable_review_labels_effort:
+                    estimated_effort = data['PR Analysis']['Estimated effort to review [1-5]']
+                    estimated_effort_number = int(estimated_effort.split(',')[0])
+                    if 1 <= estimated_effort_number <= 5: # 1, because ...
+                        review_labels.append(f'Review effort [1-5]: {estimated_effort_number}')
+                if get_settings().pr_reviewer.enable_review_labels_security:
+                    security_concerns = data['PR Analysis']['Security concerns'] # yes, because ...
+                    security_concerns_bool = 'yes' in security_concerns.lower() or 'true' in security_concerns.lower()
+                    if security_concerns_bool:
+                        review_labels.append('Possible security concern')
+
+                if review_labels:
+                    current_labels = self.git_provider.get_labels()
+                    current_labels_filtered = [label for label in current_labels if
+                                               not label.lower().startswith('review effort [1-5]:') and not label.lower().startswith(
+                                                   'possible security concern')]
+                    self.git_provider.publish_labels(review_labels + current_labels_filtered)
+            except Exception as e:
+                get_logger().error(f"Failed to set review labels, error: {e}")
--- a/pr_agent/tools/pr_similar_issue.py
+++ b/pr_agent/tools/pr_similar_issue.py
@ -10,6 +10,7 @@ from pydantic import BaseModel, Field

 from pr_agent.algo import MAX_TOKENS
 from pr_agent.algo.token_handler import TokenHandler
+from pr_agent.algo.utils import get_max_tokens
 from pr_agent.config_loader import get_settings
 from pr_agent.git_providers import get_git_provider
 from pr_agent.log import get_logger
@ -197,7 +198,7 @@ class PRSimilarIssue:
            username = issue.user.login
            created_at = str(issue.created_at)
            if len(issue_str) < 8000 or \
-                    self.token_handler.count_tokens(issue_str) < MAX_TOKENS[MODEL]:  # fast reject first
+                    self.token_handler.count_tokens(issue_str) < get_max_tokens(MODEL):  # fast reject first
                issue_record = Record(
                    id=issue_key + "." + "issue",
                    text=issue_str,
--- a/requirements.txt
+++ b/requirements.txt
@ -13,7 +13,7 @@ atlassian-python-api==3.39.0
 GitPython==3.1.32
 PyYAML==6.0
 starlette-context==0.3.6
-litellm~=0.1.574
+litellm==0.12.5
 boto3==1.28.25
 google-cloud-storage==2.10.0
 ujson==5.8.0
@ -22,3 +22,4 @@ msrest==0.7.1
 pinecone-client
 pinecone-datasets @ git+https://github.com/mrT23/pinecone-datasets.git@main
 loguru==0.7.2
+google-cloud-aiplatform==1.35.0
--- a/tests/unittest/test_load_yaml.py
+++ b/tests/unittest/test_load_yaml.py
@ -2,6 +2,9 @@
 # Generated by CodiumAI

 import pytest
+import yaml
+from yaml.scanner import ScannerError
+
 from pr_agent.algo.utils import load_yaml


@ -12,7 +15,7 @@ class TestLoadYaml:
        expected_output = {'name': 'John Smith', 'age': 35}
        assert load_yaml(yaml_str) == expected_output

-    def test_load_complicated_yaml(self):
+    def test_load_invalid_yaml1(self):
        yaml_str = \
 '''\
 PR Analysis:
@ -26,7 +29,23 @@ PR Feedback:
  Code feedback:
    - relevant file: pr_agent/settings/pr_description_prompts.toml
      suggestion: Consider using a more descriptive variable name than 'user' for the command prompt. A more descriptive name would make the code more readable and maintainable. [medium]
-      relevant line: 'user="""PR Info:'
+      relevant line: user="""PR Info: aaa
  Security concerns: No'''
-        expected_output = {'PR Analysis': {'Main theme': 'Enhancing the `/describe` command prompt by adding title and description', 'Type of PR': 'Enhancement', 'Relevant tests added': False, 'Focused PR': 'Yes, the PR is focused on enhancing the `/describe` command prompt.'}, 'PR Feedback': {'General suggestions': 'The PR seems to be well-structured and focused on a specific enhancement. However, it would be beneficial to add tests to ensure the new feature works as expected.', 'Code feedback': [{'relevant file': 'pr_agent/settings/pr_description_prompts.toml', 'suggestion': "Consider using a more descriptive variable name than 'user' for the command prompt. A more descriptive name would make the code more readable and maintainable. [medium]", 'relevant line': 'user="""PR Info:'}], 'Security concerns': False}}
+        with pytest.raises(ScannerError):
+            yaml.safe_load(yaml_str)
+
+        expected_output = {'PR Analysis': {'Main theme': 'Enhancing the `/describe` command prompt by adding title and description', 'Type of PR': 'Enhancement', 'Relevant tests added': False, 'Focused PR': 'Yes, the PR is focused on enhancing the `/describe` command prompt.'}, 'PR Feedback': {'General suggestions': 'The PR seems to be well-structured and focused on a specific enhancement. However, it would be beneficial to add tests to ensure the new feature works as expected.', 'Code feedback': [{'relevant file': 'pr_agent/settings/pr_description_prompts.toml', 'suggestion': "Consider using a more descriptive variable name than 'user' for the command prompt. A more descriptive name would make the code more readable and maintainable. [medium]", 'relevant line': 'user="""PR Info: aaa'}], 'Security concerns': False}}
        assert load_yaml(yaml_str) == expected_output
+
+    def test_load_invalid_yaml2(self):
+        yaml_str = '''\
+- relevant file: src/app.py:
+  suggestion content: The print statement is outside inside the if __name__ ==: \
+  '''
+        with pytest.raises(ScannerError):
+            yaml.safe_load(yaml_str)
+
+        expected_output =[{'relevant file': 'src/app.py:',
+  'suggestion content': 'The print statement is outside inside the if __name__ ==:   '}]
+        assert load_yaml(yaml_str) == expected_output
+
--- a/tests/unittest/try_fix_yaml.py
+++ b/tests/unittest/try_fix_yaml.py
@ -0,0 +1,31 @@
+
+# Generated by CodiumAI
+from pr_agent.algo.utils import try_fix_yaml
+
+
+import pytest
+
+class TestTryFixYaml:
+
+    # The function successfully parses a valid YAML string.
+    def test_valid_yaml(self):
+        review_text = "key: value\n"
+        expected_output = {"key": "value"}
+        assert try_fix_yaml(review_text) == expected_output
+
+    # The function adds '|-' to 'relevant line:' if it is not already present and successfully parses the YAML string.
+    def test_add_relevant_line(self):
+        review_text = "relevant line: value: 3\n"
+        expected_output = {"relevant line": "value: 3"}
+        assert try_fix_yaml(review_text) == expected_output
+
+    # The function removes the last line(s) of the YAML string and successfully parses the YAML string.
+    def test_remove_last_line(self):
+        review_text = "key: value\nextra invalid line\n"
+        expected_output = {"key": "value"}
+        assert try_fix_yaml(review_text) == expected_output
+
+    # The YAML string is empty.
+    def test_empty_yaml_fixed(self):
+        review_text = ""
+        assert try_fix_yaml(review_text) is None
Author	SHA1	Message	Date
Ori Kotek	2dcee63df5	fix improve	2023-11-27 12:32:53 +02:00
mrT23	cddf183e03	Merge pull request #470 from Codium-ai/tr/glob Enhance glob pattern handling and logging in file filtering	2023-11-22 23:19:09 -08:00
mrT23	e80a0ed9c8	glob	2023-11-23 09:16:50 +02:00
mrT23	d6d362b51e	Merge pull request #469 from Codium-ai/mrT23-patch-1 Improve Documentation in Usage.md	2023-11-22 22:14:22 -08:00
mrT23	4eff0282a1	Update Usage.md	2023-11-23 08:06:07 +02:00
mrT23	8fc07df6ef	Update INSTALL.md	2023-11-21 18:39:36 +02:00
Ori Kotek	84e4b607cc	Merge pull request #467 from Codium-ai/ok/base_url Add support for base_url in GitHub SDK	2023-11-21 16:51:16 +02:00
Ori Kotek	613ccb4c34	Add support for base_url in GitHub SDK	2023-11-21 16:48:36 +02:00
Ori Kotek	e95a6a8b07	Merge pull request #466 from Codium-ai/ok/gitlab_fix Fix a bug in GitLab webhook	2023-11-21 16:36:40 +02:00
Ori Kotek	2add584fbc	Fix a bug in GitLab webhook	2023-11-21 16:28:01 +02:00
mrT23	54d7d59177	Update Usage.md	2023-11-20 20:06:07 +02:00
mrT23	b3129c7dd9	Merge pull request #464 from Codium-ai/tr/more_protections Refactor YAML parsing for improved error handling	2023-11-20 02:28:57 -08:00
mrT23	3f76d95495	ScannerError	2023-11-20 10:35:35 +02:00
mrT23	1b600cd85f	Refactor YAML parsing for improved error handling	2023-11-20 10:30:59 +02:00
mrT23	26cc26129c	Merge pull request #463 from Codium-ai/tr/more_protections minor fix	2023-11-19 07:45:39 -08:00
mrT23	d1d7903e39	minor fix	2023-11-19 17:44:11 +02:00
mrT23	dff4d1befc	Merge pull request #462 from Codium-ai/tr/more_protections Enhancements in YAML Parsing and Error Handling	2023-11-19 07:40:06 -08:00
mrT23	3504a64269	protections	2023-11-19 17:35:40 +02:00
mrT23	83247cadec	protections	2023-11-19 17:30:57 +02:00
mrT23	5ca1748b93	Merge pull request #460 from Codium-ai/tr/update_instructions GFM mode for 'review' instructions	2023-11-19 01:20:36 -08:00
mrT23	c7a681038d	gfm instructions	2023-11-19 11:11:11 +02:00
mrT23	eb977b4c24	gfm instructions	2023-11-19 11:02:11 +02:00
mrT23	14a934b146	Update Usage.md	2023-11-17 10:41:52 +02:00
mrT23	bc28d657b2	Merge pull request #438 from koid/fix/remove-unnecessary-setup Removal of Redundant Logger Setup	2023-11-15 10:35:13 -08:00
mrT23	416a5495da	Merge pull request #453 from Codium-ai/tr/v_010 Version 0.10 Release and Workflow Update	2023-11-15 09:46:31 -08:00
mrT23	a2b27dcac8	v10	2023-11-15 19:45:51 +02:00
mrT23	d8e4e2e8fd	Merge pull request #454 from Codium-ai/coditamar-bitbucket-doc-type Update INSTALL.md	2023-11-15 09:44:03 -08:00
Itamar Friedman	896a81d173	Update INSTALL.md	2023-11-15 15:20:50 +02:00
mrT23	b216af8f04	v10	2023-11-15 14:49:18 +02:00
mrT23	388cc740b6	Merge pull request #436 from rhyst/support-vertex-ai Support Google's Vertex AI	2023-11-15 04:26:08 -08:00
mrT23	6214494c84	Merge pull request #452 from Codium-ai/tr/review_extra_labels Add Review Labels for Security and Effort Estimation	2023-11-15 04:25:03 -08:00
mrT23	762a6981e1	extra_labels	2023-11-15 14:12:59 +02:00
mrT23	b362c406bc	Merge remote-tracking branch 'origin/main' into tr/review_extra_labels	2023-11-15 14:07:44 +02:00
mrT23	7a342d3312	extra_labels	2023-11-15 14:07:32 +02:00
mrT23	2e95988741	extra_labels	2023-11-15 14:04:17 +02:00
mrT23	9478447141	extra_labels	2023-11-15 14:02:13 +02:00
mrT23	082293b48c	Merge pull request #451 from Codium-ai/tr/persistent_enhacments Enhancement of Persistent Comments in PR Review	2023-11-15 03:55:15 -08:00
mrT23	e1d92206f3	docs	2023-11-15 13:32:32 +02:00
Rhys Tyers	557ec72bfe	Update documentation for Vertex AI	2023-11-15 10:27:48 +00:00
Rhys Tyers	6b4b16dcf9	Support Google's Vertex AI	2023-11-15 10:26:58 +00:00
mrT23	c4899a6c54	bitbucket	2023-11-15 12:11:02 +02:00
mrT23	24d82e65cb	gitlab	2023-11-15 09:45:10 +02:00
mrT23	2567a6cf27	gitlab	2023-11-15 09:40:45 +02:00
mrT23	94cb6b9795	more feedback	2023-11-15 09:06:26 +02:00
mrT23	e878bbbe36	Merge pull request #449 from zmeir/patch-1 Fix `get_user_description` in case `pr_description.enable_pr_type=false`	2023-11-14 22:09:59 -08:00
Zohar Meir	7d89b82967	Fix `get_user_description` in case `pr_description.enable_pr_type=false` Fixes an issue when getting the user description after a PR-Agent description was already generated, in case the configuration setting `pr_description.enable_pr_type` was `false`.	2023-11-13 14:41:14 +02:00
Hussam Lawen	c5f9bbbf92	Merge pull request #448 from Codium-ai/hl/optional_custom_labels remove the "one or more" for custom labels	2023-11-13 13:51:18 +02:00
Hussam.lawen	a5e5a82952	s	2023-11-13 13:49:16 +02:00
Hussam.lawen	ccbb62b50a	remove the "one or more" for custom labels	2023-11-13 13:47:06 +02:00
Ori Kotek	1df36c6a44	Merge pull request #446 from Codium-ai/tr/fix_cli_args Handling CLI Arguments with Quotes in pr_agent	2023-11-12 17:29:38 +02:00
Ori Kotek	9e5e9afe92	Refactor CLI argument handling and request processing	2023-11-12 16:11:34 +02:00
mrT23	5e43c202dd	s1	2023-11-12 15:45:22 +02:00
mrT23	37e6608e68	Merge pull request #444 from Codium-ai/tr/fallback_yaml Implementing Fallback Mechanisms for YAML Parsing	2023-11-12 00:43:15 -08:00
mrT23	f64d5f1e2a	tests	2023-11-12 08:36:57 +02:00
mrT23	8fdf174dec	fallback	2023-11-10 18:44:19 +02:00
mrT23	29d4f98b19	Merge pull request #441 from Codium-ai/tr/presistent_review Add Persistent Review Feature to PR Agent	2023-11-09 05:26:51 -08:00
mrT23	737792d83c	publish_persistent_comment	2023-11-09 15:24:55 +02:00
mrT23	7e5889061c	publish_persistent_comment	2023-11-09 15:20:31 +02:00
mrT23	755e04cf65	bitbucket finally works	2023-11-08 20:41:55 +02:00
mrT23	44d6c95714	response	2023-11-08 20:38:18 +02:00
mrT23	14610d5375	persistent s	2023-11-08 20:16:08 +02:00
mrT23	f9c832d6cb	Merge pull request #439 from Codium-ai/tr/fixes_added_files Enhancement of Patch Handling and PR Processing	2023-11-08 04:48:07 -08:00
mrT23	c2bec614e5	s	2023-11-08 14:46:11 +02:00
mrT23	49725e92f2	s	2023-11-08 14:41:15 +02:00
mrT23	a1e32d8331	s	2023-11-08 14:36:59 +02:00
mrT23	0293412a42	s	2023-11-08 14:31:08 +02:00
mrT23	10ec0a1812	s	2023-11-08 14:21:03 +02:00
mrT23	69b68b78f5	s	2023-11-08 14:17:59 +02:00
mrT23	c5bc4b44ff	fix added files	2023-11-08 12:51:30 +02:00
mrT23	39e5102a2e	fix added files	2023-11-08 12:47:18 +02:00
koid	f0991526b5	remove unnecessary setup_logger	2023-11-08 16:56:44 +09:00
mrT23	6c82bc9a3e	Merge pull request #437 from Codium-ai/tr/new_gpt4 Introduce support for 'gpt-4-1106-preview' model and dynamic token limit calculation	2023-11-07 04:49:50 -08:00
mrT23	54f41dd603	code	2023-11-07 14:41:15 +02:00
mrT23	094f641fb5	code	2023-11-07 14:38:37 +02:00
mrT23	a35a75eb34	get_max_tokens + added 'gpt-4-1106-preview'	2023-11-07 14:28:41 +02:00
mrT23	5a7c118b56	Merge pull request #434 from Codium-ai/document_describe Update DESCRIBE.md	2023-11-06 11:00:06 -08:00
Hussam Lawen	cf9e0fbbc5	Update DESCRIBE.md	2023-11-06 17:55:58 +02:00
Hussam Lawen	ef9af261ed	Merge pull request #433 from Codium-ai/hl/user_labels Keep user labels	2023-11-06 15:17:19 +02:00
Hussam.lawen	ff79776410	Keep user labels	2023-11-06 15:14:08 +02:00
Hussam.lawen	ec3f2fb485	Revert "generate labels keep user labels only" This reverts commit `94a2a5e527`.	2023-11-06 15:08:29 +02:00
Hussam.lawen	94a2a5e527	generate labels keep user labels only	2023-11-06 15:07:06 +02:00
Hussam Lawen	ea4bc548fc	Merge pull request #432 from Codium-ai/hl/type_vs_labels Support git providers with no label support	2023-11-06 14:38:29 +02:00
Hussam.lawen	1eefd3365b	Merge commit 'e352c98ce83bfbd99078f62d8705eb938a6ba5b5' into hl/type_vs_labels	2023-11-06 14:24:33 +02:00
Hussam.lawen	db37ee819a	support git providers with no label support	2023-11-06 14:11:49 +02:00
mrT23	e352c98ce8	Merge pull request #431 from Codium-ai/hl/type_vs_labels Refactoring PR Labels Handling and Display	2023-11-06 02:10:38 -08:00
Hussam.lawen	e96b03da57	add configuration enable_pr_type	2023-11-06 11:58:26 +02:00
Hussam.lawen	1d2aedf169	Don't Display pr labels in the text	2023-11-06 11:35:22 +02:00
mrT23	4c484f8e86	Merge pull request #423 from zmeir/zmeir-external-incremental_review_thresholds Implementing Thresholds for Incremental PR Reviews	2023-11-06 01:07:01 -08:00
mrT23	8a79114ed9	Merge pull request #430 from Codium-ai/tr/fix_prompt Fix PR Description Prompt and Data Preparation	2023-11-06 01:06:26 -08:00
mrT23	cd69f43c77	Merge pull request #428 from Codium-ai/tr/fixes Enhancements and Fixes in Bitbucket Provider	2023-11-06 01:06:15 -08:00
mrT23	6d6d864417	fix prompt	2023-11-06 09:44:59 +02:00
zmeir	b286c8ed20	Added documentation for the new configurations	2023-11-06 09:44:04 +02:00
mrT23	7238c81f0c	fix prompt	2023-11-06 09:41:26 +02:00
mrT23	62412f8cd4	fix prompt	2023-11-06 09:38:39 +02:00
mrT23	5d2bdadb45	fix prompt	2023-11-06 09:33:10 +02:00
mrT23	06d030637c	fix prompt	2023-11-06 09:32:46 +02:00
zmeir	8e3fa3926a	Extract incremental review checks to separate method	2023-11-06 09:21:22 +02:00
zmeir	92071fcf1c	Stack all incremental parameters	2023-11-06 09:13:04 +02:00
mrT23	fed1c160eb	files walkthrough bullets	2023-11-06 08:43:15 +02:00
mrT23	e37daf6987	link to change	2023-11-06 08:27:34 +02:00
mrT23	8fc663911f	fixe bitbucket get_repo_settings bug	2023-11-06 08:15:43 +02:00
mrT23	bb2760ae41	tools	2023-11-06 08:10:04 +02:00
Hussam.lawen	3548b88463	type and labels	2023-11-05 15:48:39 +02:00
mrT23	c917e48098	Merge pull request #427 from koid/fix/add-middleware Adding Middleware to FastAPI Initialization	2023-11-05 01:40:37 -07:00
koid	e6ef123ce5	add middleware when initializing fastapi	2023-11-05 15:38:19 +09:00
mrT23	194bfe1193	Update INSTALL.md	2023-11-05 07:59:59 +02:00
mrT23	e456cf36aa	Merge pull request #425 from Codium-ai/ok/protect_apply_settings Add exception handling for applying repo settings failure	2023-11-03 11:07:49 -07:00
Ori Kotek	fe3527de3c	Add exception handling for applying repo settings failure	2023-11-03 12:23:49 +02:00
Ori Kotek	b99c769b53	Merge pull request #415 from zmeir/zmeir-patch-2 Refactor Command Handling for Different Triggers	2023-11-02 18:32:42 +02:00
Ori Kotek	60bdfb78df	Merge pull request #424 from Codium-ai/ok/bitbucket_fix Update Bitbucket Provider to Use 'position' Instead of 'start_line' for Inline Comments	2023-11-02 18:31:18 +02:00
Ori Kotek	c0b3c76884	Merge remote-tracking branch 'origin/main' into ok/bitbucket_fix	2023-11-02 15:27:11 +02:00
Ori Kotek	e1370a8385	Update publish_inline_comments in bitbucket_provider.py to use 'position' instead of 'start_line'	2023-11-02 15:24:47 +02:00
zmeir	c623c3baf4	Added new configurations to prevent too frequent incremental commits on push trigger	2023-11-02 12:24:54 +02:00
Hussam Lawen	d0f3a4139d	Merge pull request #422 from Codium-ai/pr_review_fix_type_example small fix to pr type example yaml	2023-11-02 11:48:49 +02:00
Hussam Lawen	3ddc7e79d1	Update pr_reviewer_prompts.toml	2023-11-02 11:45:34 +02:00
mrT23	3e14edfd4e	Merge pull request #421 from zmeir/patch-1 Fix error in `get_main_pr_languages` when the diff is empty	2023-11-02 01:20:36 -07:00
Zohar Meir	15573e2286	Fix error in `get_main_pr_languages` when the diff is empty This can happen for example when you have one commit add a line to a file and the next commit deletes that line. Then if those are the only 2 commits in the PR the diff will be empty.	2023-11-02 10:10:54 +02:00
Hussam Lawen	ce64877063	Merge pull request #419 from KennyDizi/fix_synstax_error Fix Syntax Error in f-string Expression	2023-11-02 08:23:17 +02:00
mrT23	6666a128ee	Update Usage.md	2023-11-01 18:36:12 +02:00
KennyDizi	9fbf89670d	Improve expression portion of f-strings	2023-11-01 19:11:52 +07:00
KennyDizi	ad1c51c536	Fix SyntaxError: f-string expression part cannot include a backslash	2023-11-01 19:06:29 +07:00
Hussam Lawen	9ab7ccd20d	Merge pull request #416 from zmeir/patch-1 Fix formatting when last commit message contains _	2023-11-01 13:13:31 +02:00
mrT23	c907f93ab8	Merge pull request #418 from KennyDizi/fix/configuration-typo Fix Typo and Update Comment for Ollama Configuration	2023-10-31 11:14:51 -07:00
KennyDizi	29a8cf8357	fix typo for ollama	2023-10-31 20:38:27 +07:00
Zohar Meir	7b6a6c7164	Fix formatting when last commit message contains _	2023-10-31 10:05:13 +02:00
Zohar Meir	cf4d007737	Fix commands list for push trigger	2023-10-31 00:00:48 +02:00
Ori Kotek	a751bb0ef0	Merge pull request #414 from Codium-ai/ok/fix_github_bug Bugfix: ignored github_app.commands on .pr-agent.toml	2023-10-30 20:28:54 +02:00
Ori Kotek	26d6280a20	Merge remote-tracking branch 'origin/main' into ok/fix_github_bug	2023-10-30 20:19:41 +02:00
Ori Kotek	32a19fdab6	Merge pull request #413 from Codium-ai/ok/bitbucket_repo_settings Update Method to Fetch Repository Settings in bitbucket_provider.py	2023-10-30 20:18:59 +02:00
Ori Kotek	775ccb3f25	Refactor _perform_commands function in github_app.py to improve command handling	2023-10-30 20:14:25 +02:00
Ori Kotek	a1c6c57f7b	Merge remote-tracking branch 'origin/main' into ok/bitbucket_repo_settings	2023-10-30 18:38:08 +02:00
Ori Kotek	73bb70fef4	Update get_repo_settings in bitbucket_provider.py to fetch file via API request	2023-10-30 18:36:46 +02:00
Hussam Lawen	dcac6c145c	Merge pull request #412 from Codium-ai/ok/fix_gitlab_bug Update get_repo_settings to decode file from target branch in gitlab_…	2023-10-30 17:04:09 +02:00
Hussam Lawen	66644f0224	Merge pull request #411 from Codium-ai/ok/fix_gitlab_bug Add Logging Context to Handle Request Calls in gitlab_webhook.py	2023-10-30 16:53:40 +02:00