diff --git a/pr_agent/servers/github_app.py b/pr_agent/servers/github_app.py
index f7cb821b..855830f8 100644
--- a/pr_agent/servers/github_app.py
+++ b/pr_agent/servers/github_app.py
@@ -128,6 +128,7 @@ async def handle_new_pr_opened(body: Dict[str, Any],
                                log_context: Dict[str, Any],
                                agent: PRAgent):
     title = body.get("pull_request", {}).get("title", "")
+    get_settings().config.is_auto_command = True
 
     # logic to ignore PRs with specific titles (e.g. "[Auto] ...")
     ignore_pr_title_re = get_settings().get("GITHUB_APP.IGNORE_PR_TITLE", [])
diff --git a/pr_agent/settings/configuration.toml b/pr_agent/settings/configuration.toml
index da15c752..2154ec5e 100644
--- a/pr_agent/settings/configuration.toml
+++ b/pr_agent/settings/configuration.toml
@@ -21,6 +21,7 @@ ai_disclaimer_title=""  # Pro feature, title for a collapsible disclaimer to AI
 ai_disclaimer=""  # Pro feature, full text for the AI disclaimer
 output_relevant_configurations=false
 large_patch_policy = "clip" # "clip", "skip"
+is_auto_command=false
 
 [pr_reviewer] # /review #
 # enable/disable features
diff --git a/pr_agent/tools/pr_code_suggestions.py b/pr_agent/tools/pr_code_suggestions.py
index e8054d3d..777ffd99 100644
--- a/pr_agent/tools/pr_code_suggestions.py
+++ b/pr_agent/tools/pr_code_suggestions.py
@@ -76,7 +76,8 @@ class PRCodeSuggestions:
             relevant_configs = {'pr_code_suggestions': dict(get_settings().pr_code_suggestions),
                                 'config': dict(get_settings().config)}
             get_logger().debug("Relevant configs", artifacts=relevant_configs)
-            if get_settings().config.publish_output and get_settings().config.publish_output_progress:
+            if (get_settings().config.publish_output and get_settings().config.publish_output_progress and
+                    not get_settings().config.get('is_auto_command', False)):
                 if self.git_provider.is_supported("gfm_markdown"):
                     self.progress_response = self.git_provider.publish_comment(self.progress)
                 else:
diff --git a/pr_agent/tools/pr_description.py b/pr_agent/tools/pr_description.py
index 02ebf28d..52194285 100644
--- a/pr_agent/tools/pr_description.py
+++ b/pr_agent/tools/pr_description.py
@@ -78,7 +78,7 @@ class PRDescription:
             relevant_configs = {'pr_description': dict(get_settings().pr_description),
                                 'config': dict(get_settings().config)}
             get_logger().debug("Relevant configs", artifacts=relevant_configs)
-            if get_settings().config.publish_output:
+            if get_settings().config.publish_output and not get_settings().config.get('is_auto_command', False):
                 self.git_provider.publish_comment("Preparing PR description...", is_temporary=True)
 
             await retry_with_fallback_models(self._prepare_prediction, ModelType.TURBO)
diff --git a/pr_agent/tools/pr_reviewer.py b/pr_agent/tools/pr_reviewer.py
index b8800b8b..35abe537 100644
--- a/pr_agent/tools/pr_reviewer.py
+++ b/pr_agent/tools/pr_reviewer.py
@@ -118,7 +118,7 @@ class PRReviewer:
                                     f"No files were changed since the [previous PR Review]({previous_review_url})")
                 return None
 
-            if get_settings().config.publish_output:
+            if get_settings().config.publish_output and not get_settings().config.get('is_auto_command', False):
                 self.git_provider.publish_comment("Preparing review...", is_temporary=True)
 
             await retry_with_fallback_models(self._prepare_prediction)